Mercurial > repos > tduigou > evaluate_manufacturability

annotate test-data/test_json.json @ 1:7eec39ef47ed draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
author tduigou
date Wed, 23 Jul 2025 09:45:19 +0000
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7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
diff changeset
1 {
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
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2 "avoid_patterns": "BsaI_site\nBsmBI_site\nBbsI_site\nSapI_site\n8x1mer\n5x3mer\n9x2mer",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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3 "hairpin_constraints": "stem_size=20, hairpin_window=200",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
diff changeset
4 "gc_constraints": "mini=0.3, maxi=0.7, window=100\nmini=0.1, maxi=0.9, window=100",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
diff changeset
5 "kmer_size": "15",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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6 "execution": "true",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
diff changeset
7 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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8 "table": "sample",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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9 "fragment_column": "fragment",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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10 "sequence_column": "sequence",
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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11 "annotation_column": "annotation"
7eec39ef47ed planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
tduigou
parents:
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12 }