annotate tool_dependencies.xml @ 84:2fef176b3b4f draft

Uploaded
author testtool
date Sun, 07 May 2017 18:12:25 -0400
parents 35b1276dffc9
children d4e478c7fee6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6936319c2d68 Uploaded
testtool
parents:
diff changeset
1 <?xml version="1.0"?>
6936319c2d68 Uploaded
testtool
parents:
diff changeset
2 <tool_dependency>
16
024ea7a3173c Uploaded
testtool
parents: 15
diff changeset
3 <package name="libcurl" version="7.35">
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
16
024ea7a3173c Uploaded
testtool
parents: 15
diff changeset
5 </package>
22
2c59ceee5230 Uploaded
testtool
parents: 21
diff changeset
6 <package name="R" version="3.2.1">
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
19
01dc371d4f32 Uploaded
testtool
parents: 18
diff changeset
8 </package>
1
ebffd425f521 Uploaded
testtool
parents: 0
diff changeset
9 <package name="450kdependency" version="0.0.1">
3
386380dfdfe1 Uploaded
testtool
parents: 2
diff changeset
10 <install version="1.0">
4
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
11 <actions>
12
1e463ef61a6f Uploaded
testtool
parents: 11
diff changeset
12 <action type="setup_r_environment">
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
13 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
16
024ea7a3173c Uploaded
testtool
parents: 15
diff changeset
14 <package name="libcurl" version="7.35" />
024ea7a3173c Uploaded
testtool
parents: 15
diff changeset
15 </repository>
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
16 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
22
2c59ceee5230 Uploaded
testtool
parents: 21
diff changeset
17 <package name="R" version="3.2.1" />
12
1e463ef61a6f Uploaded
testtool
parents: 11
diff changeset
18 </repository>
74
6d62ca722fbe Uploaded
testtool
parents: 73
diff changeset
19 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package>
47
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
20 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.36.1.tar.gz</package>
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
21 <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
22 <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>
47
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
23 <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
24 <package>https://cran.rstudio.com/src/contrib/matrixStats_0.52.2.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
25 <package>http://bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.2.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
26 <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
27 <package>https://cran.r-project.org/src/contrib/digest_0.6.12.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
28 <package>https://cran.r-project.org/src/contrib/stringi_1.1.5.tar.gz</package>
57
5a8520840894 Uploaded
testtool
parents: 56
diff changeset
29 <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
47
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
30 <package>https://cran.r-project.org/src/contrib/stringr_1.2.0.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
31 <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
32 <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
33 <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
34 <package>https://cran.r-project.org/src/contrib/doRNG_1.6.6.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
35 <package>https://cran.r-project.org/src/contrib/DBI_0.6-1.tar.gz</package>
58
177d0d97e93a Uploaded
testtool
parents: 57
diff changeset
36 <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package>
177d0d97e93a Uploaded
testtool
parents: 57
diff changeset
37 <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.10.tar.gz</package>
177d0d97e93a Uploaded
testtool
parents: 57
diff changeset
38 <package>https://cran.r-project.org/src/contrib/BH_1.62.0-1.tar.gz</package>
177d0d97e93a Uploaded
testtool
parents: 57
diff changeset
39 <package>https://cran.r-project.org/src/contrib/plogr_0.1-1.tar.gz</package>
47
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
40 <package>https://cran.r-project.org/src/contrib/RSQLite_1.1-2.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
41 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
79
d61ee807512f Uploaded
testtool
parents: 78
diff changeset
42 <package>https://cran.r-project.org/src/contrib/Archive/RCurl/RCurl_1.95-4.5.tar.gz</package>
d61ee807512f Uploaded
testtool
parents: 78
diff changeset
43 <package>https://cran.r-project.org/src/contrib/Archive/XML/XML_3.98-1.2.tar.gz</package>
61
391f46f7370d Uploaded
testtool
parents: 60
diff changeset
44 <package>https://cran.r-project.org/src/contrib/lambda.r_1.1.9.tar.gz</package>
391f46f7370d Uploaded
testtool
parents: 60
diff changeset
45 <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package>
60
82675f485774 Uploaded
testtool
parents: 59
diff changeset
46 <package>https://cran.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz</package>
82675f485774 Uploaded
testtool
parents: 59
diff changeset
47 <package>https://cran.r-project.org/src/contrib/snow_0.4-2.tar.gz</package>
47
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
48 <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.10.1.tar.gz</package>
543137e0cda5 Uploaded
testtool
parents: 46
diff changeset
49 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
65
aec2a30736f4 Uploaded
testtool
parents: 64
diff changeset
50 <package>https://cran.r-project.org/src/contrib/openssl_0.9.6.tar.gz</package>
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
51 <package>https://cran.r-project.org/src/contrib/base64_2.0.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
52 <package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package>
66
c9e0a43372ae Uploaded
testtool
parents: 65
diff changeset
53 <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.32.0.tar.gz</package>
36
b027100fa63f Uploaded
testtool
parents: 35
diff changeset
54 <package>http://bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.50.0.tar.gz</package>
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
55 <package>https://cran.r-project.org/src/contrib/Matrix_1.2-10.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
56 <package>https://cran.r-project.org/src/contrib/R6_2.2.0.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
57 <package>https://cran.r-project.org/src/contrib/nlme_3.1-131.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
58 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
59 <package>https://cran.r-project.org/src/contrib/nor1mix_1.2-2.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
60 <package>https://cran.r-project.org/src/contrib/data.table_1.10.4.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
61 <package>https://cran.r-project.org/src/contrib/mclust_5.2.3.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
62 <package>https://cran.r-project.org/src/contrib/survival_2.41-3.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
63 <package>https://cran.r-project.org/src/contrib/plyr_1.8.4.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
64 <package>https://cran.r-project.org/src/contrib/codetools_0.2-15.tar.gz</package>
37
f5f06ef33a3a Uploaded
testtool
parents: 36
diff changeset
65 <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.18.0.tar.gz</package>
69
7487bf663cf0 Uploaded
testtool
parents: 68
diff changeset
66 <package>https://cran.r-project.org/src/contrib/jsonlite_1.4.tar.gz</package>
7487bf663cf0 Uploaded
testtool
parents: 68
diff changeset
67 <package>https://cran.r-project.org/src/contrib/mime_0.5.tar.gz</package>
7487bf663cf0 Uploaded
testtool
parents: 68
diff changeset
68 <package>https://cran.r-project.org/src/contrib/curl_2.6.tar.gz</package>
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
69 <package>https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz</package>
28
d9f1658f080a Uploaded
testtool
parents: 27
diff changeset
70 <package>ftp://164.41.45.6/pub/plan/R/src/contrib/beanplot_1.2.tar.gz</package>
37
f5f06ef33a3a Uploaded
testtool
parents: 36
diff changeset
71 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package>
28
d9f1658f080a Uploaded
testtool
parents: 27
diff changeset
72 <package>http://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.42.0.tar.gz</package>
31
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
73 <package>https://cran.r-project.org/src/contrib/MASS_7.3-47.tar.gz</package>
2deb2fe18d08 Uploaded
testtool
parents: 30
diff changeset
74 <package>https://cran.r-project.org/src/contrib/reshape_0.8.6.tar.gz</package>
73
0450b7302861 Uploaded
testtool
parents: 72
diff changeset
75 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package>
53
06c2777a9862 Uploaded
testtool
parents: 52
diff changeset
76 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/IRanges_2.4.8.tar.gz</package>
74
6d62ca722fbe Uploaded
testtool
parents: 73
diff changeset
77 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomeInfoDb_1.6.3.tar.gz</package>
75
91527f5eb74e Uploaded
testtool
parents: 74
diff changeset
78 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package>
91527f5eb74e Uploaded
testtool
parents: 74
diff changeset
79 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/annotate_1.48.0.tar.gz</package>
76
07898153a83d Uploaded
testtool
parents: 75
diff changeset
80 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/genefilter_1.52.1.tar.gz</package>
07898153a83d Uploaded
testtool
parents: 75
diff changeset
81 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/zlibbioc_1.16.0.tar.gz</package>
55
e314e9c57288 Uploaded
testtool
parents: 54
diff changeset
82 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz</package>
76
07898153a83d Uploaded
testtool
parents: 75
diff changeset
83 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Biostrings_2.38.4.tar.gz</package>
54
864148bd1a4c Uploaded
testtool
parents: 53
diff changeset
84 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package>
76
07898153a83d Uploaded
testtool
parents: 75
diff changeset
85 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Rsamtools_1.22.0.tar.gz</package>
07898153a83d Uploaded
testtool
parents: 75
diff changeset
86 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package>
07898153a83d Uploaded
testtool
parents: 75
diff changeset
87 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicAlignments_1.6.3.tar.gz</package>
07898153a83d Uploaded
testtool
parents: 75
diff changeset
88 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/rtracklayer_1.30.4.tar.gz</package>
07898153a83d Uploaded
testtool
parents: 75
diff changeset
89 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package>
07898153a83d Uploaded
testtool
parents: 75
diff changeset
90 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package>
78
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
91 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
82
9f27b6bed06f Uploaded
testtool
parents: 81
diff changeset
92 <package>https://cran.r-project.org/src/contrib/Archive/irlba/irlba_1.0.3.tar.gz</package>
78
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
93 <package>https://cran.rstudio.com/src/contrib/rgl_0.98.1.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
94 <package>https://cran.rstudio.com/src/contrib/ellipse_0.3-8.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
95 <package>https://cran.rstudio.com/src/contrib/corpcor_1.6.9.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
96 <package>https://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
97 <package>https://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
98 <package>https://cran.rstudio.com/src/contrib/dplyr_0.5.0.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
99 <package>https://cran.rstudio.com/src/contrib/tidyr_0.6.2.tar.gz</package>
d495f2f6b358 Uploaded
testtool
parents: 77
diff changeset
100 <package>https://cran.rstudio.com/src/contrib/reshape2_1.4.2.tar.gz</package>
81
6417b349f94d Uploaded
testtool
parents: 80
diff changeset
101 <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package>
6417b349f94d Uploaded
testtool
parents: 80
diff changeset
102 <package>https://cran.r-project.org/src/contrib/Archive/scales/scales_0.2.4.tar.gz</package>
6417b349f94d Uploaded
testtool
parents: 80
diff changeset
103 <package>https://cran.r-project.org/src/contrib/gtable_0.2.0.tar.gz</package>
6417b349f94d Uploaded
testtool
parents: 80
diff changeset
104 <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_1.0.0.tar.gz</package>
83
35b1276dffc9 Uploaded
testtool
parents: 82
diff changeset
105 <package>https://cran.r-project.org/src/contrib/Archive/doParallel/doParallel_1.0.8.tar.gz</package>
35b1276dffc9 Uploaded
testtool
parents: 82
diff changeset
106 <package>https://cran.r-project.org/src/contrib/Archive/colorspace/colorspace_1.2-4.tar.gz</package>
35b1276dffc9 Uploaded
testtool
parents: 82
diff changeset
107 <package>https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz</package>
35b1276dffc9 Uploaded
testtool
parents: 82
diff changeset
108 <package>https://cran.r-project.org/src/contrib/Archive/NMF/NMF_0.20.5.tar.gz</package>
84
2fef176b3b4f Uploaded
testtool
parents: 83
diff changeset
109 <package>https://cran.rstudio.com/src/contrib/igraph_1.0.1.tar.gz</package>
77
eb9f5c8bed48 Uploaded
testtool
parents: 76
diff changeset
110 <package>https://cran.rstudio.com/src/contrib/mixOmics_6.1.2.tar.gz</package>
eb9f5c8bed48 Uploaded
testtool
parents: 76
diff changeset
111 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package>
76
07898153a83d Uploaded
testtool
parents: 75
diff changeset
112 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/minfi_1.16.1.tar.gz</package>
4
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
113 </action>
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
114 </actions>
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
115 </install>
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
116 <readme>
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
117 </readme>
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
118 </package>
e97662e28cfd Uploaded
testtool
parents: 3
diff changeset
119 </tool_dependency>