|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
16
|
3 <package name="libcurl" version="7.35">
|
|
31
|
4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
16
|
5 </package>
|
|
22
|
6 <package name="R" version="3.2.1">
|
|
31
|
7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
19
|
8 </package>
|
|
1
|
9 <package name="450kdependency" version="0.0.1">
|
|
3
|
10 <install version="1.0">
|
|
4
|
11 <actions>
|
|
12
|
12 <action type="setup_r_environment">
|
|
31
|
13 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
|
|
16
|
14 <package name="libcurl" version="7.35" />
|
|
|
15 </repository>
|
|
31
|
16 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
|
|
22
|
17 <package name="R" version="3.2.1" />
|
|
12
|
18 </repository>
|
|
74
|
19 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package>
|
|
47
|
20 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.36.1.tar.gz</package>
|
|
31
|
21 <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>
|
|
|
22 <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>
|
|
47
|
23 <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package>
|
|
|
24 <package>https://cran.rstudio.com/src/contrib/matrixStats_0.52.2.tar.gz</package>
|
|
|
25 <package>http://bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.2.tar.gz</package>
|
|
|
26 <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package>
|
|
|
27 <package>https://cran.r-project.org/src/contrib/digest_0.6.12.tar.gz</package>
|
|
|
28 <package>https://cran.r-project.org/src/contrib/stringi_1.1.5.tar.gz</package>
|
|
57
|
29 <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
|
|
47
|
30 <package>https://cran.r-project.org/src/contrib/stringr_1.2.0.tar.gz</package>
|
|
|
31 <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package>
|
|
|
32 <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package>
|
|
|
33 <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package>
|
|
|
34 <package>https://cran.r-project.org/src/contrib/doRNG_1.6.6.tar.gz</package>
|
|
|
35 <package>https://cran.r-project.org/src/contrib/DBI_0.6-1.tar.gz</package>
|
|
58
|
36 <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package>
|
|
|
37 <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.10.tar.gz</package>
|
|
|
38 <package>https://cran.r-project.org/src/contrib/BH_1.62.0-1.tar.gz</package>
|
|
|
39 <package>https://cran.r-project.org/src/contrib/plogr_0.1-1.tar.gz</package>
|
|
47
|
40 <package>https://cran.r-project.org/src/contrib/RSQLite_1.1-2.tar.gz</package>
|
|
|
41 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
|
|
79
|
42 <package>https://cran.r-project.org/src/contrib/Archive/RCurl/RCurl_1.95-4.5.tar.gz</package>
|
|
|
43 <package>https://cran.r-project.org/src/contrib/Archive/XML/XML_3.98-1.2.tar.gz</package>
|
|
61
|
44 <package>https://cran.r-project.org/src/contrib/lambda.r_1.1.9.tar.gz</package>
|
|
|
45 <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package>
|
|
60
|
46 <package>https://cran.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz</package>
|
|
|
47 <package>https://cran.r-project.org/src/contrib/snow_0.4-2.tar.gz</package>
|
|
47
|
48 <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.10.1.tar.gz</package>
|
|
|
49 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
|
|
65
|
50 <package>https://cran.r-project.org/src/contrib/openssl_0.9.6.tar.gz</package>
|
|
31
|
51 <package>https://cran.r-project.org/src/contrib/base64_2.0.tar.gz</package>
|
|
|
52 <package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package>
|
|
66
|
53 <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.32.0.tar.gz</package>
|
|
36
|
54 <package>http://bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.50.0.tar.gz</package>
|
|
31
|
55 <package>https://cran.r-project.org/src/contrib/Matrix_1.2-10.tar.gz</package>
|
|
|
56 <package>https://cran.r-project.org/src/contrib/R6_2.2.0.tar.gz</package>
|
|
|
57 <package>https://cran.r-project.org/src/contrib/nlme_3.1-131.tar.gz</package>
|
|
|
58 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
|
|
|
59 <package>https://cran.r-project.org/src/contrib/nor1mix_1.2-2.tar.gz</package>
|
|
|
60 <package>https://cran.r-project.org/src/contrib/data.table_1.10.4.tar.gz</package>
|
|
|
61 <package>https://cran.r-project.org/src/contrib/mclust_5.2.3.tar.gz</package>
|
|
|
62 <package>https://cran.r-project.org/src/contrib/survival_2.41-3.tar.gz</package>
|
|
|
63 <package>https://cran.r-project.org/src/contrib/plyr_1.8.4.tar.gz</package>
|
|
|
64 <package>https://cran.r-project.org/src/contrib/codetools_0.2-15.tar.gz</package>
|
|
37
|
65 <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.18.0.tar.gz</package>
|
|
69
|
66 <package>https://cran.r-project.org/src/contrib/jsonlite_1.4.tar.gz</package>
|
|
|
67 <package>https://cran.r-project.org/src/contrib/mime_0.5.tar.gz</package>
|
|
|
68 <package>https://cran.r-project.org/src/contrib/curl_2.6.tar.gz</package>
|
|
31
|
69 <package>https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz</package>
|
|
28
|
70 <package>ftp://164.41.45.6/pub/plan/R/src/contrib/beanplot_1.2.tar.gz</package>
|
|
37
|
71 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package>
|
|
28
|
72 <package>http://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.42.0.tar.gz</package>
|
|
31
|
73 <package>https://cran.r-project.org/src/contrib/MASS_7.3-47.tar.gz</package>
|
|
|
74 <package>https://cran.r-project.org/src/contrib/reshape_0.8.6.tar.gz</package>
|
|
73
|
75 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package>
|
|
53
|
76 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/IRanges_2.4.8.tar.gz</package>
|
|
74
|
77 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomeInfoDb_1.6.3.tar.gz</package>
|
|
75
|
78 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package>
|
|
|
79 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/annotate_1.48.0.tar.gz</package>
|
|
76
|
80 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/genefilter_1.52.1.tar.gz</package>
|
|
|
81 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/zlibbioc_1.16.0.tar.gz</package>
|
|
55
|
82 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz</package>
|
|
76
|
83 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Biostrings_2.38.4.tar.gz</package>
|
|
54
|
84 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package>
|
|
76
|
85 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Rsamtools_1.22.0.tar.gz</package>
|
|
|
86 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package>
|
|
|
87 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicAlignments_1.6.3.tar.gz</package>
|
|
|
88 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/rtracklayer_1.30.4.tar.gz</package>
|
|
|
89 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package>
|
|
|
90 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package>
|
|
78
|
91 <package>https://cran.rstudio.com/bin/windows/contrib/3.5/ggplot2_2.2.1.zip</package>
|
|
|
92 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
|
|
|
93 <package>https://cran.rstudio.com/src/contrib/igraph_1.0.1.tar.gz</package>
|
|
|
94 <package>https://cran.rstudio.com/src/contrib/rgl_0.98.1.tar.gz</package>
|
|
|
95 <package>https://cran.rstudio.com/src/contrib/ellipse_0.3-8.tar.gz</package>
|
|
|
96 <package>https://cran.rstudio.com/src/contrib/corpcor_1.6.9.tar.gz</package>
|
|
|
97 <package>https://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
|
|
|
98 <package>https://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz</package>
|
|
|
99 <package>https://cran.rstudio.com/src/contrib/dplyr_0.5.0.tar.gz</package>
|
|
|
100 <package>https://cran.rstudio.com/src/contrib/tidyr_0.6.2.tar.gz</package>
|
|
|
101 <package>https://cran.rstudio.com/src/contrib/reshape2_1.4.2.tar.gz</package>
|
|
77
|
102 <package>https://cran.rstudio.com/src/contrib/mixOmics_6.1.2.tar.gz</package>
|
|
|
103 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package>
|
|
76
|
104 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/minfi_1.16.1.tar.gz</package>
|
|
4
|
105 </action>
|
|
|
106 </actions>
|
|
|
107 </install>
|
|
|
108 <readme>
|
|
|
109 </readme>
|
|
|
110 </package>
|
|
|
111 </tool_dependency>
|
