Mercurial > repos > thomaswollmann > color_deconvolution
annotate color-deconvolution.xml @ 4:9bc46ae5729e draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 2a8ca0fcc48586b1fcb3ae5ca42c6f97f72c588e
author | thomaswollmann |
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date | Sat, 11 Feb 2017 17:29:14 -0500 |
parents | 3006ce5f7a7d |
children | 85185e9a50a7 |
rev | line source |
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4
9bc46ae5729e
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 2a8ca0fcc48586b1fcb3ae5ca42c6f97f72c588e
thomaswollmann
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1 <tool id="color_deconvolution" name="Color Deconvolution" version="0.6"> |
1
e5d95eb1daad
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 1cde8c600d69c7c1bb3868dadca2f8bd3009309c
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2 <description>Color deconvolution</description> |
0
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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3 <requirements> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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4 <requirement type="package" version="0.12.3" >scikit-image</requirement> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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5 <requirement type="package" version="4.0.0">pillow</requirement> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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6 <requirement type="package" version="0.18.1">scikit-learn</requirement> |
3
3006ce5f7a7d
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 98a304667a4ebb40e0e3daf35b9b1da3de5169cc
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7 <requirement type="package" version="1.12">numpy</requirement> |
0
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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8 </requirements> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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9 <command> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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10 <![CDATA[ |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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11 python "$__tool_directory__/color_deconvolution.py" '$input' '$output' '$convtype' |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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12 ]]> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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13 </command> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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14 <inputs> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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15 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file with 3 channels"/> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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16 <param name="convtype" type="select" label="Transformation type"> |
2
8fcbcf6509d8
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 92068c64f9a6c3cf59f756b9efc2d561196c6873
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17 <option value="ica" selected="True">ica</option> |
8fcbcf6509d8
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 92068c64f9a6c3cf59f756b9efc2d561196c6873
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18 <option value="pca">pca</option> |
8fcbcf6509d8
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 92068c64f9a6c3cf59f756b9efc2d561196c6873
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19 <option value="nmf">nmf</option> |
8fcbcf6509d8
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 92068c64f9a6c3cf59f756b9efc2d561196c6873
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20 <option value="fa">fa</option> |
0
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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21 <option value="xyz2rgb">xyz2rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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22 <option value="rgb_from_rbd">rgb_from_rbd</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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23 <option value="rgb_from_hdx">rgb_from_hdx</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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24 <option value="rgb2hsv">rgb2hsv</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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25 <option value="rgb_from_bro">rgb_from_bro</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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26 <option value="bpx_from_rgb">bpx_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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27 <option value="hed_from_rgb">hed_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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28 <option value="rgbcie2rgb">rgbcie2rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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29 <option value="hdx_from_rgb">hdx_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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30 <option value="xyz2luv">xyz2luv</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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31 <option value="rgb2lab">rgb2lab</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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32 <option value="hpx_from_rgb">hpx_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
thomaswollmann
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33 <option value="rgb_from_fgx">rgb_from_fgx</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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34 <option value="rgb_from_gdx">rgb_from_gdx</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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35 <option value="lab2xyz">lab2xyz</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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36 <option value="rgb_from_hpx">rgb_from_hpx</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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37 <option value="lab2rgb">lab2rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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38 <option value="rgb2rgbcie">rgb2rgbcie</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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39 <option value="bex_from_rgb">bex_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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40 <option value="xyz2lab">xyz2lab</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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41 <option value="rgb_from_bex">rgb_from_bex</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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42 <option value="fgx_from_rgb">fgx_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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43 <option value="rbd_from_rgb">rbd_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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44 <option value="rgb2hed">rgb2hed</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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45 <option value="hed2rgb">hed2rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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46 <option value="luv2rgb">luv2rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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47 <option value="luv2xyz">luv2xyz</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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48 <option value="lch2lab">lch2lab</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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49 <option value="rgb2luv">rgb2luv</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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50 <option value="ahx_from_rgb">ahx_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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51 <option value="rgb_from_hax">rgb_from_hax</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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52 <option value="hax_from_rgb">hax_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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53 <option value="rgb_from_bpx">rgb_from_bpx</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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54 <option value="rgb2xyz">rgb2xyz</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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55 <option value="gdx_from_rgb">gdx_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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56 <option value="rgb_from_ahx">rgb_from_ahx</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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57 <option value="lab2lch">lab2lch</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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58 <option value="rgb_from_hed">rgb_from_hed</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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59 <option value="bro_from_rgb">bro_from_rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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60 <option value="hsv2rgb">hsv2rgb</option> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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61 </param> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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62 </inputs> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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63 <outputs> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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64 <data format="tiff" name="output"/> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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65 </outputs> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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66 <tests> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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67 <test> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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68 <param name="input" value="galaxyIcon_noText.png" /> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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69 <param name="convtype" value="rgb2hsv" /> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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70 <output name="output" ftype="tiff" /> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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71 </test> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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72 </tests> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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73 <help>This tools performs several color deconvolution techniques.</help> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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74 <citations> |
d7bd56ed3d85
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
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75 <citation type="doi">10.7717/peerj.453</citation> |
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76 <citation type="bibtex">@inproceedings{sklearn_api, |
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77 author = {Lars Buitinck and Gilles Louppe and Mathieu Blondel and |
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78 Fabian Pedregosa and Andreas Mueller and Olivier Grisel and |
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79 Vlad Niculae and Peter Prettenhofer and Alexandre Gramfort |
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80 and Jaques Grobler and Robert Layton and Jake VanderPlas and |
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81 Arnaud Joly and Brian Holt and Ga{\"{e}}l Varoquaux}, |
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82 title = {{API} design for machine learning software: experiences from the scikit-learn |
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83 project}, |
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84 booktitle = {ECML PKDD Workshop: Languages for Data Mining and Machine Learning}, |
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85 year = {2013}, |
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86 pages = {108--122}, |
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87 }</citation> |
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88 </citations> |
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89 </tool> |