Mercurial > repos > thomaswollmann > detection_viz

diff detection_viz.xml @ 1:ff66bae1f7f8 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
author thomaswollmann
date Mon, 07 Jan 2019 05:36:36 -0500
parents 629d9e8ca64c
children
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--- a/detection_viz.xml	Wed Dec 12 04:37:59 2018 -0500
+++ b/detection_viz.xml	Mon Jan 07 05:36:36 2019 -0500
@@ -6,8 +6,10 @@
     </requirements>
     <command>
         <![CDATA[
-        python '$__tool_directory__/detection_viz.py' '$input' '$output' --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
-]]>
+        python '$__tool_directory__/detection_viz.py' '$input' ./tmp.png 
+        --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
+        && mv ./tmp.png '$output'
+        ]]>
     </command>
     <inputs>
         <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>