Mercurial > repos > thomaswollmann > labelimage2points

diff labelimage2points.xml @ 0:732d95b2b030 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
author thomaswollmann
date Wed, 12 Dec 2018 04:38:34 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/labelimage2points.xml	Wed Dec 12 04:38:34 2018 -0500
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+<tool id="labelimage2points" name="Label 2 Points" version="0.1">
+    <description>Converts label image to points.</description>
+    <requirements>
+        <requirement type="package" version="0.12.3" >scikit-image</requirement>
+        <requirement type="package" version="0.21.0" >pandas</requirement>
+    </requirements>
+    <command>
+        <![CDATA[
+        python '$__tool_directory__/labelimage2points.py' '$input' '$output'
+        ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/>
+    </inputs>
+    <outputs>
+        <data format="csv" name="output"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="label.tif" />
+            <output name="output" value="points.csv" ftype="csv" />
+        </test>
+    </tests>
+    <help>Calculates the center of mass for all differently colored regions in the image.</help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>