Mercurial > repos > thomaswollmann > labelimage2points

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
author thomaswollmann
date Wed, 12 Dec 2018 04:38:34 -0500
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732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
thomaswollmann
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1 <tool id="labelimage2points" name="Label 2 Points" version="0.1">
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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2 <description>Converts label image to points.</description>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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3 <requirements>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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4 <requirement type="package" version="0.12.3" >scikit-image</requirement>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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5 <requirement type="package" version="0.21.0" >pandas</requirement>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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6 </requirements>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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7 <command>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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8 <![CDATA[
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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9 python '$__tool_directory__/labelimage2points.py' '$input' '$output'
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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10 ]]>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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11 </command>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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12 <inputs>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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14 </inputs>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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15 <outputs>
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16 <data format="csv" name="output"/>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="input" value="label.tif" />
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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21 <output name="output" value="points.csv" ftype="csv" />
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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22 </test>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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23 </tests>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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24 <help>Calculates the center of mass for all differently colored regions in the image.</help>
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25 <citations>
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26 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
732d95b2b030 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
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27 </citations>
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28 </tool>