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4
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1 <tool id="IntervalStats" name="Compute window statistics" version="1.0.0">
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2 <description>on data in a Wiggle file</description>
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3 <command interpreter="sh">
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4 galaxyToolRunner.sh ngs.IntervalStats -l $windows -o $output
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5 #for $input in $inputs
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6 ${input.file}
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7 #end for
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8 </command>
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9 <inputs>
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10 <repeat name="inputs" title="BigWig file">
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11 <param name="file" type="data" format="bigwig,wig" />
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12 </repeat>
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13 <param format="bed,bedgraph,gff" name="windows" type="data" label="List of intervals" />
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14 <!-- TODO: Implement other statistics
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15 <param name="stat" type="select" optional="true" label="For each window, compute the">
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16 <option value="mean">Mean</option>
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17 <option value="median">Median</option>
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18 <option value="max">Max</option>
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19 <option value="min">Min</option>
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20 </param> -->
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21 </inputs>
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22 <outputs>
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23 <data format="tabular" name="output" />
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24 </outputs>
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25
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26 <help>
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27 .. class:: warningmark
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28
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29 This tool requires Wiggle/BigWig input data.
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30 </help>
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31 </tool>
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