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4
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1 <tool id="RollingReadLength" name="Compute read length" version="1.0.0">
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2 <description>from paired-end sequencing reads</description>
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3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
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4 <inputs>
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5 <param format="bam" name="input" type="data" label="Mapped reads" />
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6 </inputs>
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7 <outputs>
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8 <data format="wig" name="output" />
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9 </outputs>
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10
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11 <help>
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12 .. class:: warningmark
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13
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14 This tool requires paired-end BAM formatted data. Using single-end data will result in a constant read length.
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15
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16 .. class:: warningmark
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17
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18 This tool was contributed by Timothy Palpant.
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19 </help>
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20 </tool>
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