Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/RollingReadLength.xml @ 4:4b32ed5d4a1b
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| author | timpalpant |
|---|---|
| date | Tue, 14 Feb 2012 00:59:33 -0500 |
| parents | |
| children | 4fc118372ae7 |
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| 3:4b610dc8f6ba | 4:4b32ed5d4a1b |
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| 1 <tool id="RollingReadLength" name="Compute read length" version="1.0.0"> | |
| 2 <description>from paired-end sequencing reads</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> | |
| 4 <inputs> | |
| 5 <param format="bam" name="input" type="data" label="Mapped reads" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="wig" name="output" /> | |
| 9 </outputs> | |
| 10 | |
| 11 <help> | |
| 12 .. class:: warningmark | |
| 13 | |
| 14 This tool requires paired-end BAM formatted data. Using single-end data will result in a constant read length. | |
| 15 | |
| 16 .. class:: warningmark | |
| 17 | |
| 18 This tool was contributed by Timothy Palpant. | |
| 19 </help> | |
| 20 </tool> |