Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/BaseAlignCounts.xml @ 7:4fc118372ae7

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Uploaded new version with fixes and broader support for interval files
author timpalpant
date Sun, 19 Feb 2012 01:54:28 -0500
parents 422ac2bbb274
children 9266d807ca85
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6:422ac2bbb274 7:4fc118372ae7
1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0"> 1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0">
2 <description>of sequencing reads</description> 2 <description>of sequencing reads</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command>
4 <inputs> 4 <inputs>
5 <param name="input" type="data" format="bam" label="Sequencing reads" /> 5 <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" />
6 <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" /> 6 <param name="X" type="integer" value="-1" label="In silico extension (-1 for read length)" />
7 </inputs> 7 </inputs>
8 <outputs> 8 <outputs>
9 <data name="output" format="wig" /> 9 <data name="output" format="wig" />
10 </outputs> 10 </outputs>
11 11