Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/BaseAlignCounts.xml @ 7:4fc118372ae7
Uploaded new version with fixes and broader support for interval files
| author | timpalpant |
|---|---|
| date | Sun, 19 Feb 2012 01:54:28 -0500 |
| parents | 422ac2bbb274 |
| children | 9266d807ca85 |
| rev | line source |
|---|---|
| 4 | 1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0"> |
| 2 <description>of sequencing reads</description> | |
| 5 | 3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command> |
| 4 | 4 <inputs> |
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7
4fc118372ae7
Uploaded new version with fixes and broader support for interval files
timpalpant
parents:
6
diff
changeset
|
5 <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" /> |
|
4fc118372ae7
Uploaded new version with fixes and broader support for interval files
timpalpant
parents:
6
diff
changeset
|
6 <param name="X" type="integer" value="-1" label="In silico extension (-1 for read length)" /> |
| 4 | 7 </inputs> |
| 8 <outputs> | |
| 9 <data name="output" format="wig" /> | |
| 10 </outputs> | |
| 11 | |
| 12 <help> | |
| 13 .. class:: warningmark | |
| 14 | |
| 6 | 15 This tool requires sequencing reads in BAM format. |
| 4 | 16 </help> |
| 17 </tool> |