Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/BaseAlignCounts.xml @ 7:4fc118372ae7

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Uploaded new version with fixes and broader support for interval files
author timpalpant
date Sun, 19 Feb 2012 01:54:28 -0500
parents 422ac2bbb274
children 9266d807ca85
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--- a/galaxy-conf/BaseAlignCounts.xml	Tue Feb 14 18:40:50 2012 -0500
+++ b/galaxy-conf/BaseAlignCounts.xml	Sun Feb 19 01:54:28 2012 -0500
@@ -2,8 +2,8 @@
   <description>of sequencing reads</description>
   <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command>
   <inputs>
-    <param name="input" type="data" format="bam" label="Sequencing reads" />
-    <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" />
+    <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" />
+    <param name="X" type="integer" value="-1" label="In silico extension (-1 for read length)" />
   </inputs>
   <outputs>
     <data name="output" format="wig" />