Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/LogTransform.xml @ 20:9d56b5b85740 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Reuploaded to see if tools get loaded correctly this time.
author timpalpant
date Fri, 15 Jun 2012 15:10:26 -0400
parents
children b43c420a6135
comparison
equal deleted inserted replaced
19:8ad390e82b92 20:9d56b5b85740
1 <tool id="WigLogTransform" name="Log transform" version="1.1.0">
2 <description>a (Big)Wig file</description>
3 <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command>
4 <inputs>
5 <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
6 <param name="base" type="integer" value="2" label="Logarithm base" />
7 </inputs>
8 <outputs>
9 <data format="wig" name="output" metadata_source="input" />
10 </outputs>
11 <tests>
12 <test>
13 <param name="input" value="wigmath1.wig"/>
14 <param name="base" value="2"/>
15 <output name="output" file="logger1.wig"/>
16 </test>
17 <test>
18 <param name="input" value="wigmath2.wig"/>
19 <param name="base" value="3"/>
20 <output name="output" file="logger2.wig"/>
21 </test>
22 <test>
23 <param name="input" value="wigmath3.wig"/>
24 <param name="base" value="10"/>
25 <output name="output" file="logger3.wig"/>
26 </test>
27 <test>
28 <param name="input" value="wigmath1.bw"/>
29 <param name="base" value="2"/>
30 <output name="output" file="logger4.wig"/>
31 </test>
32 <test>
33 <param name="input" value="wigmath2.bw"/>
34 <param name="base" value="3"/>
35 <output name="output" file="logger5.wig"/>
36 </test>
37 <test>
38 <param name="input" value="wigmath3.bw"/>
39 <param name="base" value="10"/>
40 <output name="output" file="logger6.wig"/>
41 </test>
42 </tests>
43
44 <help>
45
46 .. class:: infomark
47
48 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
49
50 </help>
51 </tool>