Mercurial > repos > timpalpant > java_genomics_toolkit
diff galaxy-conf/LogTransform.xml @ 20:9d56b5b85740 draft
Reuploaded to see if tools get loaded correctly this time.
author | timpalpant |
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date | Fri, 15 Jun 2012 15:10:26 -0400 |
parents | |
children | b43c420a6135 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy-conf/LogTransform.xml Fri Jun 15 15:10:26 2012 -0400 @@ -0,0 +1,51 @@ +<tool id="WigLogTransform" name="Log transform" version="1.1.0"> + <description>a (Big)Wig file</description> + <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command> + <inputs> + <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" /> + <param name="base" type="integer" value="2" label="Logarithm base" /> + </inputs> + <outputs> + <data format="wig" name="output" metadata_source="input" /> + </outputs> + <tests> + <test> + <param name="input" value="wigmath1.wig"/> + <param name="base" value="2"/> + <output name="output" file="logger1.wig"/> + </test> + <test> + <param name="input" value="wigmath2.wig"/> + <param name="base" value="3"/> + <output name="output" file="logger2.wig"/> + </test> + <test> + <param name="input" value="wigmath3.wig"/> + <param name="base" value="10"/> + <output name="output" file="logger3.wig"/> + </test> + <test> + <param name="input" value="wigmath1.bw"/> + <param name="base" value="2"/> + <output name="output" file="logger4.wig"/> + </test> + <test> + <param name="input" value="wigmath2.bw"/> + <param name="base" value="3"/> + <output name="output" file="logger5.wig"/> + </test> + <test> + <param name="input" value="wigmath3.bw"/> + <param name="base" value="10"/> + <output name="output" file="logger6.wig"/> + </test> + </tests> + + <help> + +.. class:: infomark + +**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly. + + </help> +</tool>