Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/LogTransform.xml @ 20:9d56b5b85740 draft

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Reuploaded to see if tools get loaded correctly this time.
author timpalpant
date Fri, 15 Jun 2012 15:10:26 -0400
parents
children b43c420a6135
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20
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1 <tool id="WigLogTransform" name="Log transform" version="1.1.0">
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2 <description>a (Big)Wig file</description>
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3 <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command>
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4 <inputs>
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5 <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
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6 <param name="base" type="integer" value="2" label="Logarithm base" />
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7 </inputs>
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8 <outputs>
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9 <data format="wig" name="output" metadata_source="input" />
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10 </outputs>
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11 <tests>
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12 <test>
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13 <param name="input" value="wigmath1.wig"/>
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14 <param name="base" value="2"/>
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15 <output name="output" file="logger1.wig"/>
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16 </test>
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17 <test>
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18 <param name="input" value="wigmath2.wig"/>
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19 <param name="base" value="3"/>
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20 <output name="output" file="logger2.wig"/>
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21 </test>
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22 <test>
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23 <param name="input" value="wigmath3.wig"/>
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24 <param name="base" value="10"/>
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25 <output name="output" file="logger3.wig"/>
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26 </test>
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27 <test>
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28 <param name="input" value="wigmath1.bw"/>
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29 <param name="base" value="2"/>
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30 <output name="output" file="logger4.wig"/>
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31 </test>
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32 <test>
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33 <param name="input" value="wigmath2.bw"/>
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34 <param name="base" value="3"/>
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35 <output name="output" file="logger5.wig"/>
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36 </test>
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37 <test>
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38 <param name="input" value="wigmath3.bw"/>
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39 <param name="base" value="10"/>
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40 <output name="output" file="logger6.wig"/>
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41 </test>
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42 </tests>
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43
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44 <help>
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45
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46 .. class:: infomark
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47
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48 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
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49
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50 </help>
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51 </tool>