Mercurial > repos > timpalpant > java_genomics_toolkit
diff galaxy-conf/FastqIlluminaToSanger.xml @ 13:eb53be9a09f4 draft
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author | timpalpant |
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date | Sat, 19 May 2012 10:36:45 -0400 |
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children | 3e477c7e0e73 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy-conf/FastqIlluminaToSanger.xml Sat May 19 10:36:45 2012 -0400 @@ -0,0 +1,25 @@ +<tool id="FastqIlluminaToSanger" name="Convert Fastq qualities" version="1.0.0"> + <description>from Illumina to Sanger</description> + <command interpreter="sh">galaxyToolRunner.sh converters.FastqIlluminaToSanger -i $input -o $output</command> + <inputs> + <param name="input" type="data" format="fastqillumina" label="FASTQ, Illumina qualities" /> + </inputs> + <outputs> + <data name="output" format="fastqsanger" metadata_source="input" /> + </outputs> + <tests> + <test> + <param name="input" value="test.fastqillumina" ftype="fastqillumina"/> + <output name="output" file="test.fastqsanger"/> + </test> + </tests> +<help> + +This tool will convert a FASTQ file with ASCII quality scores encoded in Illumina 1.3 format (Phred+64) to Sanger format (Phred+33). It is a simpler, faster version of the FASTQ Groomer. + +.. class:: warningmark + +This tool requires fastqillumina formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. + +</help> +</tool>