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5
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1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.11">
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2
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2 <description>tail-to-head</description>
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3 <requirements>
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4
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4 <container type="docker">triasteran/bowite0127:latest</container>
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2
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5 </requirements>
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6 <command>
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7 echo "Galaxy slots passed through contain as \$GALAXY_SLOTS";
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8 cat $input1
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9 #for $q in $queries
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10 ${q.input2}
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11 #end for
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12 > $out_file1;
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13 echo "Work dir output" > working_file
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5
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14 bowtie --version
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15 python2 --version
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16 bowtie-build --version
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2
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17 </command>
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18 <inputs>
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19 <param name="input1" type="data" label="Concatenate Dataset"/>
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20 <repeat name="queries" title="Dataset">
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21 <param name="input2" type="data" label="Select" />
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22 </repeat>
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23 </inputs>
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24 <outputs>
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25 <data name="out_file1" format="input" metadata_source="input1"/>
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26 <data name="out_file2" format="txt" from_work_dir="working_file" />
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27 </outputs>
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28 <help>
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29 </help>
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30 </tool>
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