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diff orthologs/ucsb_hamster/lib/wisecfg/gene.stat @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/orthologs/ucsb_hamster/lib/wisecfg/gene.stat	Tue Mar 11 12:19:13 2014 -0700
@@ -0,0 +1,170 @@
+#
+# new genestats file
+#
+splice3 10
+ENSE00000673410   TCCCACATAGATCA
+ENSE00000673409   TATCCTGCAGTATG
+ENSE00000673408   TTTGCTATAGATTA
+ENSE00000673407   GGTTTTTCAGTTGC
+ENSE00000401072   CTCCCATTAGGGTT
+ENSE00000868868   TTATTTCTAGCTGA
+ENSE00000401061   CTTTGGTTAGGCAG
+ENSE00000673400   GTTCTCCCAGGCCT
+ENSE00000673402   TGTTTTATAGGGAT
+ENSE00000673403   CTTCTTTCAGAATG
+ENSE00000868865   ATTATCTTAGTTTC
+ENSE00000662824   ATTTTTTTAGTGGA
+ENSE00000662823   TCATTTTTAGGAAC
+ENSE00000662822   CAAATTTCAGCCAA
+ENSE00000662821   TATTCTACAGGAAG
+ENSE00000662820   TATTTGGCAGCCGT
+ENSE00000662819   TTTCTTACAGATTA
+ENSE00000814444   ATTTTTAAAGCATT
+ENSE00000814445   TTTTTTCCAGGGAC
+ENSE00000814446   CTCTGTCTAGTTTC
+ENSE00000814447   CTGCTTTTAGTCTC
+ENSE00000814448   TGGATTTCAGTTTC
+ENSE00000789672   TGGCATTTAGAAAT
+ENSE00000789671   TTGTCCTCAGATTT
+ENSE00000814451   TTTCGGGTAGATCA
+ENSE00000814452   TTGCTCCTAGGTTT
+ENSE00000789668   TTCCCTACAGGCGA
+ENSE00000789652   TTCTTTGCAGTTAT
+ENSE00000789653   ATTCATTTAGGCAG
+ENSE00000789654   TTTGGATCAGGATA
+ENSE00000789655   TTTATTTTAGGAAT
+ENSE00000789656   CCCTTCCCAGCAAG
+ENSE00000789657   TACATGTAAGACCT
+ENSE00000789658   TTCCCTGCAGGATA
+ENSE00000789659   TTTTGATTAGGATG
+ENSE00000789660   TATATTGCAGATAT
+ENSE00000789661   CTTTTTCCAGATAA
+ENSE00000789662   TTTATTTCAGCTGG
+ENSE00000450960   TGTCCTTCAGAACA
+ENSE00000789663   TGTTTCTTAGGTAG
+ENSE00000789664   ACCTCTGTAGGCAG
+ENSE00000789665   GTTCTTTTAGGACA
+ENSE00000789666   TTTTTAATAGGGAA
+ENSE00000450963   TCCCTGGCAGACTG
+ENSE00000813771   AACTTTTCAGCTCT
+ENSE00000813770   TATTACACAGGATT
+//
+splice5 5
+ENSE00000673410   ACTGGTGAGTCCTT
+ENSE00000673409   TGAGGTAAGCCTGA
+ENSE00000673408   TACGGTAAGTGGTA
+ENSE00000673407   TGAAGTAAGGTGCC
+ENSE00000401072   CCAAGTAAGTTTTT
+ENSE00000868868   TAAGGTGCGTTCAT
+ENSE00000401061   AAAAGTAAGTAAAT
+ENSE00000673400   AAACGTAAGTTGGA
+ENSE00000673402   TGAGGTATGTAAGA
+ENSE00000673403   TCAGGTATGACATT
+ENSE00000868865   CTATGTGAGTTATG
+ENSE00000662824   GTAAGTTATAAGAA
+ENSE00000662823   CCATGTAAGTGGTA
+ENSE00000662822   TTAGGTAGGTACTA
+ENSE00000662821   TCAGGTAGGTACAT
+ENSE00000662820   TCAGGTACAGTGAA
+ENSE00000662819   CGAGGTATGCAACT
+ENSE00000814444   CAGAGTAAGTAACC
+ENSE00000814445   AGAGGTAAGCCAGG
+ENSE00000814446   GATGGTAAGATGAT
+ENSE00000814447   CAGGGTGAGTTGGA
+ENSE00000814448   TCAGGTGAGGGCAT
+ENSE00000789672   TTAAGTAAGTTCAG
+ENSE00000789671   AAAGGTGAATGCTT
+ENSE00000814451   ACAGGTCAGAGGCC
+ENSE00000814452   GAAGGTAAGAATTA
+ENSE00000789668   TGAGGTGAGTACTT
+ENSE00000789652   TTAAGTAAGTTTGT
+ENSE00000789653   ACAGGTAAAATTTG
+ENSE00000789654   TAAGGTAAGGCTTT
+ENSE00000789655   ACAGGTAAGAAGAA
+ENSE00000789656   TTAGGTAAGCTTCA
+//
+# A G C T N
+intron_emission 
+0.25 0.25 0.25 0.25 0.25
+//
+polyp_emission  
+0.2  0.2  0.3  0.3  0.25
+//
+rnd_emission 
+0.25 0.25 0.25 0.25 0.25
+//
+rndcodon 
+AAA 5290.000000
+AAC 4795.000000
+AAG 8178.000000
+AAT 3305.000000
+ACA 6240.000000
+ACC 7728.000000
+ACG 3347.000000
+ACT 4930.000000
+AGA 8491.000000
+AGC 8639.000000
+AGG 8997.000000
+AGT 4417.000000
+ATA 1975.000000
+ATC 4973.000000
+ATG 6474.000000
+ATT 3083.000000
+CAA 7057.000000
+CAC 6815.000000
+CAG 11041.000000
+CAT 5779.000000
+CCA 10537.000000
+CCC 10307.000000
+CCG 5621.000000
+CCT 10134.000000
+CGA 3377.000000
+CGC 5146.000000
+CGG 5375.000000
+CGT 2765.000000
+CTA 3502.000000
+CTC 7465.000000
+CTG 13780.000000
+CTT 5453.000000
+GAA 7461.000000
+GAC 6937.000000
+GAG 9975.000000
+GAT 4949.000000
+GCA 7747.000000
+GCC 10890.000000
+GCG 4828.000000
+GCT 9371.000000
+GGA 10143.000000
+GGC 10400.000000
+GGG 8869.000000
+GGT 5567.000000
+GTA 2143.000000
+GTC 4593.000000
+GTG 8189.000000
+GTT 3021.000000
+TAA 1775.000000
+TAC 3687.000000
+TAG 1333.000000
+TAT 2477.000000
+TCA 6180.000000
+TCC 7668.000000
+TCG 2875.000000
+TCT 5767.000000
+TGA 7315.000000
+TGC 8625.000000
+TGG 11718.000000
+TGT 5197.000000
+TTA 1664.000000
+TTC 5462.000000
+TTG 4420.000000
+TTT 3453.000000
+//
+
+
+
+
+
+
+
+
+