Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
view orthologs/ucsb_hamster/lib/wisecfg/gene.stat @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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# # new genestats file # splice3 10 ENSE00000673410 TCCCACATAGATCA ENSE00000673409 TATCCTGCAGTATG ENSE00000673408 TTTGCTATAGATTA ENSE00000673407 GGTTTTTCAGTTGC ENSE00000401072 CTCCCATTAGGGTT ENSE00000868868 TTATTTCTAGCTGA ENSE00000401061 CTTTGGTTAGGCAG ENSE00000673400 GTTCTCCCAGGCCT ENSE00000673402 TGTTTTATAGGGAT ENSE00000673403 CTTCTTTCAGAATG ENSE00000868865 ATTATCTTAGTTTC ENSE00000662824 ATTTTTTTAGTGGA ENSE00000662823 TCATTTTTAGGAAC ENSE00000662822 CAAATTTCAGCCAA ENSE00000662821 TATTCTACAGGAAG ENSE00000662820 TATTTGGCAGCCGT ENSE00000662819 TTTCTTACAGATTA ENSE00000814444 ATTTTTAAAGCATT ENSE00000814445 TTTTTTCCAGGGAC ENSE00000814446 CTCTGTCTAGTTTC ENSE00000814447 CTGCTTTTAGTCTC ENSE00000814448 TGGATTTCAGTTTC ENSE00000789672 TGGCATTTAGAAAT ENSE00000789671 TTGTCCTCAGATTT ENSE00000814451 TTTCGGGTAGATCA ENSE00000814452 TTGCTCCTAGGTTT ENSE00000789668 TTCCCTACAGGCGA ENSE00000789652 TTCTTTGCAGTTAT ENSE00000789653 ATTCATTTAGGCAG ENSE00000789654 TTTGGATCAGGATA ENSE00000789655 TTTATTTTAGGAAT ENSE00000789656 CCCTTCCCAGCAAG ENSE00000789657 TACATGTAAGACCT ENSE00000789658 TTCCCTGCAGGATA ENSE00000789659 TTTTGATTAGGATG ENSE00000789660 TATATTGCAGATAT ENSE00000789661 CTTTTTCCAGATAA ENSE00000789662 TTTATTTCAGCTGG ENSE00000450960 TGTCCTTCAGAACA ENSE00000789663 TGTTTCTTAGGTAG ENSE00000789664 ACCTCTGTAGGCAG ENSE00000789665 GTTCTTTTAGGACA ENSE00000789666 TTTTTAATAGGGAA ENSE00000450963 TCCCTGGCAGACTG ENSE00000813771 AACTTTTCAGCTCT ENSE00000813770 TATTACACAGGATT // splice5 5 ENSE00000673410 ACTGGTGAGTCCTT ENSE00000673409 TGAGGTAAGCCTGA ENSE00000673408 TACGGTAAGTGGTA ENSE00000673407 TGAAGTAAGGTGCC ENSE00000401072 CCAAGTAAGTTTTT ENSE00000868868 TAAGGTGCGTTCAT ENSE00000401061 AAAAGTAAGTAAAT ENSE00000673400 AAACGTAAGTTGGA ENSE00000673402 TGAGGTATGTAAGA ENSE00000673403 TCAGGTATGACATT ENSE00000868865 CTATGTGAGTTATG ENSE00000662824 GTAAGTTATAAGAA ENSE00000662823 CCATGTAAGTGGTA ENSE00000662822 TTAGGTAGGTACTA ENSE00000662821 TCAGGTAGGTACAT ENSE00000662820 TCAGGTACAGTGAA ENSE00000662819 CGAGGTATGCAACT ENSE00000814444 CAGAGTAAGTAACC ENSE00000814445 AGAGGTAAGCCAGG ENSE00000814446 GATGGTAAGATGAT ENSE00000814447 CAGGGTGAGTTGGA ENSE00000814448 TCAGGTGAGGGCAT ENSE00000789672 TTAAGTAAGTTCAG ENSE00000789671 AAAGGTGAATGCTT ENSE00000814451 ACAGGTCAGAGGCC ENSE00000814452 GAAGGTAAGAATTA ENSE00000789668 TGAGGTGAGTACTT ENSE00000789652 TTAAGTAAGTTTGT ENSE00000789653 ACAGGTAAAATTTG ENSE00000789654 TAAGGTAAGGCTTT ENSE00000789655 ACAGGTAAGAAGAA ENSE00000789656 TTAGGTAAGCTTCA // # A G C T N intron_emission 0.25 0.25 0.25 0.25 0.25 // polyp_emission 0.2 0.2 0.3 0.3 0.25 // rnd_emission 0.25 0.25 0.25 0.25 0.25 // rndcodon AAA 5290.000000 AAC 4795.000000 AAG 8178.000000 AAT 3305.000000 ACA 6240.000000 ACC 7728.000000 ACG 3347.000000 ACT 4930.000000 AGA 8491.000000 AGC 8639.000000 AGG 8997.000000 AGT 4417.000000 ATA 1975.000000 ATC 4973.000000 ATG 6474.000000 ATT 3083.000000 CAA 7057.000000 CAC 6815.000000 CAG 11041.000000 CAT 5779.000000 CCA 10537.000000 CCC 10307.000000 CCG 5621.000000 CCT 10134.000000 CGA 3377.000000 CGC 5146.000000 CGG 5375.000000 CGT 2765.000000 CTA 3502.000000 CTC 7465.000000 CTG 13780.000000 CTT 5453.000000 GAA 7461.000000 GAC 6937.000000 GAG 9975.000000 GAT 4949.000000 GCA 7747.000000 GCC 10890.000000 GCG 4828.000000 GCT 9371.000000 GGA 10143.000000 GGC 10400.000000 GGG 8869.000000 GGT 5567.000000 GTA 2143.000000 GTC 4593.000000 GTG 8189.000000 GTT 3021.000000 TAA 1775.000000 TAC 3687.000000 TAG 1333.000000 TAT 2477.000000 TCA 6180.000000 TCC 7668.000000 TCG 2875.000000 TCT 5767.000000 TGA 7315.000000 TGC 8625.000000 TGG 11718.000000 TGT 5197.000000 TTA 1664.000000 TTC 5462.000000 TTG 4420.000000 TTT 3453.000000 //