Mercurial > repos > vimalkumarvelayudhan > riboplot

annotate README.rst @ 33:42fe64cac818

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add bedtools as a dependency for riboplot
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Fri, 30 Oct 2015 12:14:40 +0000
parents fc2094c0f355
children de451be99b93
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
14
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
1 RiboPlot
18
cff63cf0dea8 Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 15
diff changeset
2 ========
14
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
3 RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
4
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
5 There are two programs in the package:
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
6
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
7 **riboplot**
18
cff63cf0dea8 Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 15
diff changeset
8
14
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
9 Plot and output read counts (csv) for a single transcript.
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
10
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
11 **ribocount**
18
cff63cf0dea8 Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 15
diff changeset
12
14
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
13 Output read counts for all transcripts in an alignment.
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
14
18
cff63cf0dea8 Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 15
diff changeset
15 Free software: GPL license
14
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
16
30
b26c8f3b5aa6 Use latest version of riboplot from PyPI (0.2.1)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 29
diff changeset
17 Documentation: http://pythonhosted.org/riboplot
18
cff63cf0dea8 Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 15
diff changeset
18
32
fc2094c0f355 Update README (notes on matplotlib)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 30
diff changeset
19 Repository: https://github.com/vimalkvn/riboplot
18
cff63cf0dea8 Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 15
diff changeset
20
28
60bbd8ebe314 Working install (virtualenv)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 18
diff changeset
21
60bbd8ebe314 Working install (virtualenv)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 18
diff changeset
22 .. note::
60bbd8ebe314 Working install (virtualenv)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 18
diff changeset
23
33
42fe64cac818 Add bedtools as a dependency for riboplot
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 32
diff changeset
24 Matplotlib installation requires freetype headers and libraries installed
42fe64cac818 Add bedtools as a dependency for riboplot
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents: 32
diff changeset
25 (``libfreetype6-dev`` on Ubuntu 14.04).
14
628f82e72d72 Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents: 7
diff changeset
26