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annotate deseq-hts_1.0/bin/deseq_config.sh.sample @ 11:cec4b4fb30be draft default tip

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DEXSeq version 1.6 added
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 08:22:45 -0400
parents e27b4f7811c2
children
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9
e27b4f7811c2 Updated DESeq version 1.12
vipints <vipin@cbio.mskcc.org>
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1 #!/bin/bash
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vipints <vipin@cbio.mskcc.org>
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2 export DESEQ_VERSION=1.10.1
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vipints <vipin@cbio.mskcc.org>
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3 export DESEQ_PATH=/home/galaxy/software/deseq_hts/
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vipints <vipin@cbio.mskcc.org>
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4 export DESEQ_SRC_PATH=$DESEQ_PATH/src
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vipints <vipin@cbio.mskcc.org>
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5 export DESEQ_BIN_PATH=$DESEQ_PATH/bin
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vipints <vipin@cbio.mskcc.org>
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6 export INTERPRETER=octave
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vipints <vipin@cbio.mskcc.org>
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7 export MATLAB_BIN_PATH=
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vipints <vipin@cbio.mskcc.org>
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8 export MATLAB_MEX_PATH=
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vipints <vipin@cbio.mskcc.org>
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9 export MATLAB_INCLUDE_DIR=
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vipints <vipin@cbio.mskcc.org>
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10 export OCTAVE_BIN_PATH=/home/galaxy/software/octave/source/octave-3.6.3/octave
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vipints <vipin@cbio.mskcc.org>
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11 export OCTAVE_MKOCT=/home/galaxy/software/bin/mkoctfile
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vipints <vipin@cbio.mskcc.org>
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12 export SAMTOOLS_DIR=/home/galaxy/software/samtools-0.1.17/
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vipints <vipin@cbio.mskcc.org>
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13 export PYTHON_PATH=/usr/bin/python
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14 export SCIPY_PATH=/home/galaxy/software/lib/python2.6/site-packages/
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vipints <vipin@cbio.mskcc.org>
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15 export R_PATH=/home/galaxy/software/bin/R
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vipints <vipin@cbio.mskcc.org>
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16 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/oqtansTools/oqtans_dep/octave-3.6.2_64/lib/octave/3.6.2/
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vipints <vipin@cbio.mskcc.org>
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17 export ENVIRONMENT=galaxy