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comparison fastx_toolkit-0.0.6/src/libfastx/fastx_args.h @ 3:997f5136985f draft default tip
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| author | xilinxu |
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| date | Thu, 14 Aug 2014 04:52:17 -0400 |
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| 2:dfe9332138cf | 3:997f5136985f |
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| 1 /* | |
| 2 FASTX-toolkit - FASTA/FASTQ preprocessing tools. | |
| 3 Copyright (C) 2009 A. Gordon (gordon@cshl.edu) | |
| 4 | |
| 5 This program is free software: you can redistribute it and/or modify | |
| 6 it under the terms of the GNU Affero General Public License as | |
| 7 published by the Free Software Foundation, either version 3 of the | |
| 8 License, or (at your option) any later version. | |
| 9 | |
| 10 This program is distributed in the hope that it will be useful, | |
| 11 but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| 13 GNU Affero General Public License for more details. | |
| 14 | |
| 15 You should have received a copy of the GNU Affero General Public License | |
| 16 along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 */ | |
| 18 #ifndef __FASTX_ARGS__ | |
| 19 #define __FASTX_ARGS__ | |
| 20 | |
| 21 #ifdef __cplusplus | |
| 22 extern "C" { | |
| 23 #endif | |
| 24 | |
| 25 //One day this would all be OO :-) | |
| 26 | |
| 27 const char* get_input_filename(); | |
| 28 const char* get_output_filename(); | |
| 29 int verbose_flag(); | |
| 30 int compress_output_flag(); | |
| 31 FILE* get_report_file(); | |
| 32 | |
| 33 typedef int (*parse_argument_func)(int optind, int optc, char* optarg) ; | |
| 34 | |
| 35 int fastx_parse_cmdline( int argc, char* argv[], | |
| 36 const char* program_options, | |
| 37 parse_argument_func program_parse_arg ) ; | |
| 38 | |
| 39 | |
| 40 #ifdef __cplusplus | |
| 41 } | |
| 42 #endif | |
| 43 | |
| 44 #endif | |
| 45 |