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3
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1 /*
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2 FASTX-toolkit - FASTA/FASTQ preprocessing tools.
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3 Copyright (C) 2009 A. Gordon (gordon@cshl.edu)
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4
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5 This program is free software: you can redistribute it and/or modify
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6 it under the terms of the GNU Affero General Public License as
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7 published by the Free Software Foundation, either version 3 of the
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8 License, or (at your option) any later version.
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9
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10 This program is distributed in the hope that it will be useful,
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11 but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 GNU Affero General Public License for more details.
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14
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15 You should have received a copy of the GNU Affero General Public License
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16 along with this program. If not, see <http://www.gnu.org/licenses/>.
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17 */
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18 #ifndef __FASTX_ARGS__
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19 #define __FASTX_ARGS__
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20
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21 #ifdef __cplusplus
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22 extern "C" {
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23 #endif
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24
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25 //One day this would all be OO :-)
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26
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27 const char* get_input_filename();
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28 const char* get_output_filename();
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29 int verbose_flag();
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30 int compress_output_flag();
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31 FILE* get_report_file();
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32
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33 typedef int (*parse_argument_func)(int optind, int optc, char* optarg) ;
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34
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35 int fastx_parse_cmdline( int argc, char* argv[],
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36 const char* program_options,
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37 parse_argument_func program_parse_arg ) ;
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38
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39
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40 #ifdef __cplusplus
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41 }
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42 #endif
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43
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44 #endif
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45
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