--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastx_toolkit-0.0.6/src/libfastx/fastx_args.h	Thu Aug 14 04:52:17 2014 -0400
@@ -0,0 +1,45 @@
+/*
+    FASTX-toolkit - FASTA/FASTQ preprocessing tools.
+    Copyright (C) 2009  A. Gordon (gordon@cshl.edu)
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU Affero General Public License as
+    published by the Free Software Foundation, either version 3 of the
+    License, or (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU Affero General Public License for more details.
+
+    You should have received a copy of the GNU Affero General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+#ifndef __FASTX_ARGS__
+#define __FASTX_ARGS__
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+//One day this would all be OO :-)
+
+const char* get_input_filename();
+const char* get_output_filename();
+int verbose_flag();
+int compress_output_flag();
+FILE* get_report_file();
+
+typedef int (*parse_argument_func)(int optind, int optc, char* optarg)  ;
+
+int fastx_parse_cmdline( int argc, char* argv[],
+			 const char* program_options,
+			 parse_argument_func program_parse_arg ) ;
+
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+