Mercurial > repos > xuebing > bed_to_bigwig

changeset 2:c5bf1ec88e4e

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Uploaded
author xuebing
date Sat, 31 Mar 2012 14:04:50 -0400
parents ccd3fd69df1a
children 4e9e1625dae3
files bed_to_bigwig.xml
diffstat 1 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/bed_to_bigwig.xml	Sat Mar 31 14:04:04 2012 -0400
+++ b/bed_to_bigwig.xml	Sat Mar 31 14:04:50 2012 -0400
@@ -20,12 +20,13 @@
 		    <param name="input" type="data" format="bam" label="Input file"/>
 	    </when>
     </conditional>
-    <param name="genome" type="select" label="Select genome">
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm9.genome" selected="true">mm9</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm8.genome">mm8</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg18.genome">hg18</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg19.genome">hg19</option>
-    </param>
+           <param name="genome" type="select" label="Select chromsome size file" >
+                <options from_file="chrsize.loc">
+                    <column name="name" index="0"/>
+                    <column name="value" index="1"/>
+                </options>
+            </param>
+
     <param name="sorted" label="Check if the input is sorted" type="boolean" truevalue="sorted" falsevalue="none" checked="False"/>
     <param name="split" label="Split junctions" help="Treat 'split' BAM or BED12 entries as distinct BED intervals." type="boolean" truevalue="-split" falsevalue="" checked="False"/>
   </inputs>