|
0
|
1 <tool id="EMBOSS: wobble108" name="wobble" version="5.0.0">
|
|
|
2 <description>Wobble base plot</description>
|
|
|
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
|
|
|
4 <command interpreter="perl">emboss_single_outputfile_wrapper.pl wobble -sequence $input1 -graph png -goutfile $ofile1 -outfile $ofile2 -window "$window" -bases "$bases" -auto</command>
|
|
|
5 <inputs>
|
|
|
6 <param format="fasta" name="input1" type="data">
|
|
|
7 <label>Sequence</label>
|
|
|
8 </param>
|
|
|
9 <param name="window" size="5" type="text" value="30">
|
|
|
10 <label>Window size, in codons</label>
|
|
|
11 </param>
|
|
|
12 <param name="bases" size="6" type="text" value="GC">
|
|
|
13 <label>Bases used</label>
|
|
|
14 </param>
|
|
|
15 </inputs>
|
|
|
16 <outputs>
|
|
|
17 <data format="png" name="ofile1" />
|
|
|
18 <data format="wobble" name="ofile2" />
|
|
|
19 </outputs>
|
|
|
20 <tests>
|
|
|
21 <test>
|
|
|
22 <param name="input1" value="2.fasta"/>
|
|
|
23 <param name="window" value="30"/>
|
|
|
24 <param name="bases" value="GC"/>
|
|
|
25 <output name="ofile2" file="emboss_wobble_out.wobble"/>
|
|
|
26 </test>
|
|
|
27 </tests>
|
|
|
28 <help>
|
|
|
29
|
|
|
30 .. class:: warningmark
|
|
|
31
|
|
|
32 The input dataset needs to be sequences.
|
|
|
33
|
|
|
34 -----
|
|
|
35
|
|
|
36 You can view the original documentation here_.
|
|
|
37
|
|
|
38 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wobble.html
|
|
|
39 </help>
|
|
|
40 </tool>
|
