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1 <tool id="EMBOSS: cusp17" name="cusp" version="5.0.0">
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2 <description>Create a codon usage table</description>
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3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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4 <command>cusp -sequence $input1 -outfile $out_file1 -auto</command>
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5 <inputs>
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6 <param format="fasta" name="input1" type="data">
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7 <label>On query</label>
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8 </param>
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9 </inputs>
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10 <outputs>
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11 <data format="cusp" name="out_file1" />
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12 </outputs>
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13 <tests>
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14 <test>
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15 <param name="input1" value="2.fasta"/>
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16 <output name="out_file1" file="emboss_cusp_out.cusp"/>
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17 </test>
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18 </tests>
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19 <help>
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20 .. class:: warningmark
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21
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22 The input dataset needs to be sequences.
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23
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24 -----
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25
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26 You can view the original documentation here_.
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27
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28 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cusp.html
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29 </help>
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30 </tool>
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