Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_cusp.xml @ 0:9071e359b9a3
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| author | xuebing |
|---|---|
| date | Fri, 09 Mar 2012 19:37:19 -0500 |
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| -1:000000000000 | 0:9071e359b9a3 |
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| 1 <tool id="EMBOSS: cusp17" name="cusp" version="5.0.0"> | |
| 2 <description>Create a codon usage table</description> | |
| 3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
| 4 <command>cusp -sequence $input1 -outfile $out_file1 -auto</command> | |
| 5 <inputs> | |
| 6 <param format="fasta" name="input1" type="data"> | |
| 7 <label>On query</label> | |
| 8 </param> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data format="cusp" name="out_file1" /> | |
| 12 </outputs> | |
| 13 <tests> | |
| 14 <test> | |
| 15 <param name="input1" value="2.fasta"/> | |
| 16 <output name="out_file1" file="emboss_cusp_out.cusp"/> | |
| 17 </test> | |
| 18 </tests> | |
| 19 <help> | |
| 20 .. class:: warningmark | |
| 21 | |
| 22 The input dataset needs to be sequences. | |
| 23 | |
| 24 ----- | |
| 25 | |
| 26 You can view the original documentation here_. | |
| 27 | |
| 28 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cusp.html | |
| 29 </help> | |
| 30 </tool> |