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annotate README.rst @ 0:01ed8e112f2a draft

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author yating-l
date Wed, 12 Apr 2017 17:44:58 -0400
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01ed8e112f2a planemo upload commit 6bf6d4ec8ff2ec6bd45b5f483ff2f83b6229d57d
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1 A Galaxy Wrapper for regtools
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2 =============================
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4 This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/).
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6 This wrapper adds an validation step to check if the output files are valid BED format. The lines with invalid strand (neighter "+" or "-") will be removed.
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8 This wrapper creates a new 13th column to store the scores. The scores in column 4 will be changed to 1000.
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10 The output is BED 12+1.