Mercurial > repos > ynewton > extract_tumor_vs_normal_tcga_ids

changeset 3:28d795d45ca2 draft

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Uploaded
author ynewton
date Thu, 17 Jan 2013 20:22:07 -0500
parents 82e5ee13fe5a
children 1728895db87e
files get_normal_vs_tumor_sample_ids.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/get_normal_vs_tumor_sample_ids.xml	Thu Jan 17 20:18:46 2013 -0500
+++ b/get_normal_vs_tumor_sample_ids.xml	Thu Jan 17 20:22:07 2013 -0500
@@ -1,6 +1,6 @@
-<tool id="extract_tumor_vs_normal_ID_lists" name="Extract tumor vs. normal TCGA IDs" version="1.0.0">
+<tool id="extract_tumor_vs_normal_ID_lists" name="Extract_tumor_vs_normal_TCGA_IDs" version="1.0.0">
   <description>Extract normal vs. tumor IDs for TCGA samples</description>
-  <command interpreter="python">get_normal_vs_tumor_sample_ids.py $tableData $outfile1 $outfile2
+  <command interpreter="python">get_normal_vs_tumor_sample_ids.py --in_matrix $tableData --out_normals $outfile1 --out_tumor $outfile2
   </command>
   <inputs>
 	  <param name="tableData" format="tabular" type="data" label="Input data"/>