annotate deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/loadHTSeqResultFiles.xml @ 10:6e573fd3c41b draft

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author yufei-luo
date Mon, 13 May 2013 10:06:30 -0400
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1 <tool id="load_HTSeqResultFiles" name="load HTSeqResultFiles" >
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2 <description>To load several HTSeq result files from different conditions.</description>
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3 <command interpreter="python"> loadHTSeqResultFiles.py -o $htseqRes_out
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4 -i
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5 #for $i in $condition_groups
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6 #for $j in $i.replicates
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7 $j.tabular_file
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8 #end for
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9 @
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10 #end for
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12 </command>
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13 <inputs>
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14 <repeat name="condition_groups" title="Condition group" min="2">
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15 <repeat name="replicates" title="Replicate">
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16 <param name="tabular_file" format="tabular" type="data" label="TABULAR file."/>
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17 </repeat>
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18 </repeat>
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19 </inputs>
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21 <outputs>
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22 <data format="txt" name="htseqRes_out" label="HTSeq result files" help="This program gives you a list of files you choose for the following data analysis."/>
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24 </outputs>
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25 <help>
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26 </help>
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27
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28 </tool>
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