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comparison SMART/Java/Python/genome.fasta @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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30:5677346472b5 31:0ab839023fe4
1 >chr1
2 GTAATCAACTACCAATTCCAGCTCTCTTTTGACAACTGGTCTTATACCCACTTCCGTACACTTGCAACCC
3 TCGTAAGACAATTGCAAATGAGTAATGGCCTTCCAATTAGCATTGGACGCCCTTGCACCCACGACTCACA
4 GAGATCCCTCTCTGCACCCGATTCTCGAATCCACAGTGGATTCAATTCGCTCCTCGATACAGACCTACCC
5 ATGGTCCATTCCGAAGGAACTTCTACCCCTACTCAACTCCTACGGCATCCCAACATCTGGTTTGGGAACC
6 TCCCACCACCCCCACGCCGCCCACAAGACAATCGAGACTTTTCTCCTTTGCACCCACTGGTCTTTCCAGG
7 CCACCACTCCCAGCTCCGTCATGTTCATGAAACCCAGCAAGTTCAACAAACTTGCCCAGGTAAACTCAAA
8 CTTTCGGGAGCTGAAGAACTACCGCCTGCACCCCAACGACAGCACTCGTTACCCCTTCACATCACCAGAC
9 CTTCCCGTTTTCCCCACCATTTTCATGCACGACGCCCTGATGTATTACCATCCGTCCCAGATCATGGACC
10 TGTTCTTRCGGAAACCAAACCTCGAACGTCTGTACGCCAGCCTCGTAGTGCCACCCGAGGCCCATCTTTC
11 CGACCAATCCTTCTACCCAAAGTTGTACACGTACACGACGACCCGCCACACTCTTCACTACGTCCCAGAG
12 GGTCACGAAGCCGGCAGCTACAACCAACCGTCCGACGCCCACTCTTGGCTCCGAATCAATTCCATTCGCC
13 TCGGCAACCACCACCTCTCAGTGACGATCCTGGAATCCTGGGGCCCCGTCCACTCGCTCCTCATTCAACG
14 AGGGACCCCCCCCCCCGACCCATCACTCCAGGCCCCTCCAACACTCATGRCCTCAGACCTCTTTCGGTCT
15 TACCAAGARCCTCGCCTCGACGTGGTCTCCTTCCGAATCCCCGACGCCATCGAACTTCCACAGGCCACAT
16 TCCTCCAACAACCACTTCGAGACCGACTGGTCCCCCGAGCCGTCTACAACGCCCTGTTCACCTATACCAG
17 AGCAGTCCGCACACTCCGAACTTCAGACCCAGCAGCATTCGTAAGGATGCACTCCTCCAAACCGGACCAC
18 GATTGGGTCACCTCGAACGCCTGGGACAACCTGCAAACCTTCGCACTTCTGAACGTTCCCCTCCGACCAA
19 ACGTCGTCTACCACGTTCTTCAGAGCCCAATCGCCTCCCTAAGCCTTTACCTGAGGCAACATTGGCGCCG
20 TCTTACCGCCACCGCCGTCCCTATCCTCTCCTTCCTAACCCTCCTGCAGCGCTTCCTTCCATTGCCTATA
21 CCTCTAGCAGAGGTAAAATCCATCACAGCCTTCCGAAGGGAGCTTTACCGAAAGAAGGAGCCCCACCACC
22 CCCTCGACGTCTTCCATCTCCAGCACCGCGTCCGCAACTACCACTCCGCGATCTCGGCCGTACGCCCGGC
23 TTCCCCACCCCACCAAAAACTCCCACACGCACTCCAGAAAGCCGCATTACTGCTTCTCCGACCGATATCG
24 CCCCTCTTGACAGCGACCCCGTTCTTTCGGTCCGAACAGAAGTCCATGCTCCCGAACGCCGAACTTTCAT
25 GGACCCTGAAGCGCTTCGCTCTGCCCTGGCAAGCCTCCCTAGTCCTCCTCGCTCTGTCGGAATCATCCAT
26 ACTGCTCCACAAACTGTTCTCCCCGCCAACCCTCCAAGCCCAACACGACACCTACCACCGACATCTCCAC
27 CCTGGATCCTACAGTCTCCAGTGGGAGAGGACGCCATTGTCGATTCCGAGGACGACAGCATTTCTTCCTT
28 TCACTCCCACGACTTCGACAGCCCCTCCGGACCGCTCCGAAGCCAGTCTCCCTCCCGCTTTCGCCTCCAC
29 CTTCGTTCCCCGTCCACCTCCAGCGGCATCGAGCCCTGGAGCCCAGCCTCCTACGACTACGGCAGCGCCC
30 CCGACACCGATTGAACCCACCCAACGCACCCATCAAAATTCTGACCTCGCGCTCGAAAGTTCAACCTCAA
31 CCGAACCTCCCCCACCCCCCATCCGATCCCCCGACAYGACGCCCTCCGCCCCCGTCCTTTTCCCAGAAAT
32 CAACTCACCTCGTCGTTTTCCCCCCCAACTTCCCGCCACGCCCGATCTCGAACCCGCCCACACTCCACCC
33 CCTCTTTCCATCCCGCACCAAGATCCGACTGACTCAGCGGACCCCCTCATGGGCTCCCACCTTTTGCACC
34 ATTCACTGCCTGCACCCCCCACCCACCCCCTTCCATCTTCACAGCTGTTACCCGCACCTTTAACGAACGA
35 CCCCACTGCGATCGGCCCGGTGCTCCCCTTTGAAGAACTCCACCCACGCAGGTACCCTGAAAACACCGCC
36 ACTTTCCTCACGAGGCTCCGTTCACTCCCATCAAACCATCTTCCACAACCCACCTTGAATTGTCTTCTCT
37 CCGCTGTCTCCGACCAAACCAAGGTTTCCGAGGAGCACCTCTGGGAGTCCCTACAGACAATTCTCCCAGA
38 CAGCCAACTCAGCAATGAAGAGACCAACACTCTCGGGCTTTCAACTGAACACCTCACTGCGTTGGCCCAC
39 CTTTACAACTTCCAGGCAACCGTTTACTCCGATCGCGGCCCCATCCTCTTCGGCCCCTCCGACACCATCA
40 AGAGGATAGACATCACCCACACCACCGGACCGCCATCCCACTTTTCACCCGGCAAAAGACTCCTAGGCAG
41 CCAACCCTCCGCTAAGGGCCATCCCTCCGACCCACTCATCAGAGCCATGAAGTCTTTCAAAGTATCCGGC
42 AACTACCTTCCCTTCTCTGAGGCCCACAACCATCCCACCTCCATCTCACACGCCAAGAACTTGATTTCAA
43 ACATGAAGAATGGTTTCGACGGCGTCCTCTCCCTCCTCGACGTCTCCACGGGCCAACGAACCGGACCCRC
44 CCCCAAAGAACGGATCATCCAGATAGACCACTACCTTGACACCAACCCCGGCAAAACCACTCCTGTGGTG
45 CATTTCGCTGGCTTCGCTGGCTGTGGGAAGACATATCCGATCCAACAGCTCCTCAAAACCAAACTGTTCA
46 AAGACTTCCGGGTCTCTTGCCCTACCACAGAACTCAGAACCGAATGGAAGACAGCGATGGAACTCCACGG
47 CTCCCAGTCATGGCGCTTTAACACTTGGGAGTCTTCCATTCTCAAGTCATCCAGAATCCTGGTCATTGAT
48 GAGATCTACAAAATGCCAAGAGGGTACCTCGACCTTTCCATCCTCGCCGACCCCGCCCTCGAGCTCGTCA
49 TAATTCTCGGCGATCCTCTMCAGGGCGAGTACCACTCCCAATCGAAAGACTCATCCAACCACCGCCTTCC
50 CTCTGAAACTCTCAGGCTGCTACCATACATCGACATGTACTGCTGGTGGAGTTACCGCATTCCTCAATGC
51 ATCGCCCGACTCTTCCAAATTCACAGCTTCAATGCCTGGCAAGGAGTTATCGGGTCCGTTTCCACTCCCC
52 ATGATCAATCCCCCGTCCTCACCAACAGTCATGCCTCATCTCTTACCTTCAACAGCCTGGGATATCGCTC
53 CTGCACGATCAGCTCTAGCCAAGGCCTCACATTCTGCGACCCCGCCATAATCGTCCTGGACAACTACACC
54 AAGTGGCTCTCCTCGGCTAACGGCCTCGTCGCCCTCACTCGATCCAGATCAGGCGTCCAATTCATGKGCC
55 CCTCTTCCTACGTCGGGGGAACCAACGGCTCTTCCGCCATGTTTTCCGACGCCTTCAACAACAGCCTCAT
56 CATCATGGATCGCTACTTCCCATCCCTGTTCCCGCAACTCAAGCTCATCACCTCCCCCCTCACAACTCGC
57 GGCCCCAAACTCAACGGGGCCACCCCCAGCGCATCCCCCACCCACCGTTCGCCAAACTTCCACCTTCCCC
58 CACACATTCCGCTCTCCTATGATCGTGATTTTGTTACGGTGAACCCAACTCTCCCCGACCAAGGACCCGA
59 AACAAGACTCGACACCCACTTTCTCCCACCGTCTCGGCTCCCTCTCCATTTCGATCTCCCACCGGCTATC
60 ACCCCACCCCCGGTTTCCACAAGCGTCGACCCGCCACAAGCGAAAGCTAGCCCCGTCTACCCAGGCGAGT
61 TCTTCGATTCTCTGGCGGCGTTCTTCTTACCAGCACACGACCCATCAACAAGGGAAATACTCCACAAAGA
62 TCAATCTAGCAACCAGTTCCCCTGGTTCGACCGACCCTTCAGCCTGTCCTGCCAGCCCTCAAGTCTGATT
63 TCCGCCAAGCATGCACCCAACCATGATCCGACCCTTCTACCGGCCTCCATCAACAAACGCTTGCGATTCA
64 GACCCAGTGACTCACCGCACCAAATCACCGCGGACGACGTGGTCCTAGGCCTGCAACTCTTTCACTCTCT
65 TTGTCGCGCCTACTCACGTCAACCCAACAGCACCGTTCCATTCAACCCTGAACTTTTCGCAGAATGCATC
66 TCTCTGAATGAGTACGCACAGCTCAGTTCCAAAACCCAATCCACCATAGTGGCCAACGCTTCACGCTCCG
67 ACCCAGACTGGCGACACACCACCGTCAAGATCTTCGCGAAAGCCCAACACAAAGTCAACGACGGCTCCAT
68 CTTCGGCTCGTGGAAAGCCTGCCAGACCCTCGCACTCATGCACGACTACGTGATTCTGGTTCTTGGACCC
69 GTCAAGAAATACCAGAGAATCTTCGACAACGCTGACCGGCCACCTAACATCTACTCACACTGCGGCAAGA
70 CACCCAACCAACTTCGAGATTGGTGCCAGGAACATCTCACTCATTCCACCCCCAAAATCGCAAACGACTA
71 CACCGCTTTCGACCAGTCCCAGCATGGAGAATCCGTGGTCCTTGAAGCCCTCAAAATGAAGAGACTGAAC
72 ATTCCRAGCCATCTGATTCAGCTCCACGTCCACCTCAAGACCAACGTCTCCACCCAGTTCGGCCCCCTCA
73 CATGCATGCGCCTAACCGGGGAACCCGGAACTTACGACGACAACACTGACTATAACCTCGCAGTCATCTA
74 CTCCCAGTATGACGTCGGTTCCTGCCCCATCATGGTTTCTGGCGACGACTCACTCATAGACCACCCCCTT
75 CCCACTCGCCACGACTGGCCATCCGTTCTCAAACGCCTCCACCTCCGCTTCAAACTTGAACTCACCTCTC
76 ACCCCCTCTTCTGTGGCTACTACGTCGGTCCAGCCGGCTGCATCCGCAACCCCCTGGCCCTTTTCTGCAA
77 GCTCATGATCGCCGTGGACGACGACGCCCTCGACGACCGACGACTCAGCTACCTCACCGAGTTCACCACC
78 GGACACCTCCTTGGCGAATCACTGTGGCACCTCCTCCCTGAAACCCATGTTCAGTATCAGTCAGCCTGCT
79 TTGACTTCTTCTGCAGGCGGTGCCCAAGACACGAGAAAATGCTCCTCGACGACTCCACACCCGCACTCAG
80 CCTCCTCGAACGAATCACTTCTTCGCCGAGGTGGCTCACCAAAAATGCCATGTACCTCCTCCCTGCCAAG
81 CTACGACTGGCCATCACCTCTCTATCTCAAACGCAGTCCTTCCCAGAATCCATCGAGGTTTCCCACGCTG
82 AGTCTGAATTGCTTCACTACGTCCAATAGCAATCAGCCCCAACATGGAAATCGACAAAGAACTCGCCCCC
83 CAAGACCGCACCGTCACCGTCGCCACCGTCCTACCAGCTGTCCCCGGCCCATCACCTCTCACCATCAAAC
84 AACCGTTYCAGTCTGAAGTTCTATTTGCTGGAACCAAAGATGCCGAGGCTTCTCTCACCATCGCCAACAT
85 CGACAGCGTTTCCACCCTCACCACCTTCTACCGTCATGCATCTCTGGAATCACTCTGGGTCACTATCCAT
86 CCCACCTTGCAAGCCCCAGCTTTCCCGACCACGGTCGGTGTCTGCTGGGTACCCGCCAATTCTCCAGTCA
87 CTCCCGCCCAAATCACCAAGACCTATGGTGGCCAGATCTTCTGCATTGGCGGCGCCATCAACACCCTCTC
88 ACCTCTCATCGTCAAGTGCCCACTTGAAATGATGAACCCCCGGGTCAAGGATTCGATTCAGTACCTTGAC
89 TCGCCCAAACTCCTCATCTCCATCACCGCTCAACCCACCGCTCCCCCCGCATCGACCTGCATAATAACTG
90 TATCAGGAACTCTCTCGATGCACTCTCCGCTCATCACGGACACTTCCACCTAAGTTCTCGATCTTTAAAA
91 TCGTTAGCTCGCCAGTTAGCGAGGTCTGTCCCCACACGACAGATAATCGGGTGCAACTCCCGCCCCTCTT
92 CCGAGGGTCATCGGAACC