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comparison SMART/galaxy/CountReadGCPercent.xml @ 38:2c0c0a89fad7

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author m-zytnicki
date Thu, 02 May 2013 09:56:47 -0400
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37:d22fadc825e3 38:2c0c0a89fad7
1 <tool id="CountReadGCPercent" name="count read GC percent">
2 <description>Count GC percent for each read against a genome.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
6 <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
7 <inputs>
8 <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
9 <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
10 </inputs>
11
12 <outputs>
13 <data format="gff3" name="outputFile" label="[count read GC percent] Output File"/>
14 </outputs>
15
16 <help>
17 Count the GC% of a FASTA file.
18 </help>
19 </tool>
20