Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/CountReadGCPercent.xml @ 38:2c0c0a89fad7
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author | m-zytnicki |
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date | Thu, 02 May 2013 09:56:47 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/galaxy/CountReadGCPercent.xml Thu May 02 09:56:47 2013 -0400 @@ -0,0 +1,20 @@ +<tool id="CountReadGCPercent" name="count read GC percent"> + <description>Count GC percent for each read against a genome.</description> + <requirements> + <requirement type="set_environment">PYTHONPATH</requirement> + </requirements> + <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command> + <inputs> + <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/> + <param name="inputGffFile" type="data" label="Input File" format="gff3"/> + </inputs> + + <outputs> + <data format="gff3" name="outputFile" label="[count read GC percent] Output File"/> + </outputs> + + <help> +Count the GC% of a FASTA file. + </help> +</tool> +