Mercurial > repos > yufei-luo > s_mart
annotate SMART/galaxy/CountReadGCPercent.xml @ 38:2c0c0a89fad7
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| author | m-zytnicki |
|---|---|
| date | Thu, 02 May 2013 09:56:47 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 38 | 1 <tool id="CountReadGCPercent" name="count read GC percent"> |
| 2 <description>Count GC percent for each read against a genome.</description> | |
| 3 <requirements> | |
| 4 <requirement type="set_environment">PYTHONPATH</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command> | |
| 7 <inputs> | |
| 8 <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/> | |
| 9 <param name="inputGffFile" type="data" label="Input File" format="gff3"/> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data format="gff3" name="outputFile" label="[count read GC percent] Output File"/> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 Count the GC% of a FASTA file. | |
| 18 </help> | |
| 19 </tool> | |
| 20 |