Mercurial > repos > yufei-luo > s_mart

comparison commons/pyRepetUnit/convCoord/test/Test_ConvPathChr2Chunk.py @ 18:94ab73e8a190

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents
children
comparison
equal deleted inserted replaced
17:b0e8584489e6 18:94ab73e8a190
1 from commons.core.utils.FileUtils import FileUtils
2 from commons.core.sql.DbFactory import DbFactory
3 from commons.pyRepetUnit.convCoord.ConvPathChr2Chunk import ConvPathChr2Chunk
4 import unittest
5 import os
6
7 class Test_ConvPathChr2Chunk(unittest.TestCase):
8
9 def setUp(self):
10 self._pathfilename="dummy.path"
11 self._pathtablename="dummy_path"
12
13 self._chunkmapfilename="chunk.map"
14 self._chunkmaptable="test_chunk_map"
15
16 self._resfilename="dummy_res.path"
17
18 map4convData="chunk1\tchr1\t1\t100\n"
19 map4convData+="chunk2\tchr1\t90\t200\n"
20 map4convData+="chunk3\tchr1\t190\t300\n"
21
22 map4conv=open(self._chunkmapfilename,"w")
23 map4conv.write(map4convData)
24 map4conv.close()
25
26 self._db = DbFactory.createInstance()
27 self._db.createTable(self._chunkmaptable, "map", self._chunkmapfilename, True)
28
29 path2convData="1\tchr1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
30 path2convData+="1\tchr1\t90\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
31 path2convData+="2\tchr1\t150\t160\tsub1\t10\t50\t0.01\t1000\t99\n"
32
33 path2convData+="3\tchr1\t70\t210\tsub1\t10\t50\t0.01\t1000\t99\n"
34 path2convData+="4\tchr1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
35 path2convData+="5\tchr1\t85\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
36
37 path2convData+="6\tchr1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
38 path2convData+="6\tchr1\t90\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
39 path2convData+="7\tchr1\t150\t160\tsub1\t10\t50\t0.01\t1000\t99\n"
40 path2convData+="8\tchr1\t190\t300\tsub1\t10\t50\t0.01\t1000\t99\n"
41
42 path2convData+="9\tchr1\t70\t210\tsub1\t10\t50\t0.01\t1000\t99\n"
43 path2convData+="10\tchr1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
44 path2convData+="11\tchr1\t85\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
45 path2convData+="12\tchr1\t190\t300\tsub1\t10\t50\t0.01\t1000\t99\n"
46
47 path2conv=open(self._pathfilename,"w")
48 path2conv.write(path2convData)
49 path2conv.close()
50
51 self._db.createTable(self._pathtablename, "path", self._pathfilename)
52
53 pathResData="1\tchunk1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
54 pathResData+="1\tchunk1\t90\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
55 pathResData+="1\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
56 pathResData+="2\tchunk2\t61\t71\tsub1\t10\t50\t0.01\t1000\t99\n"
57
58 pathResData+="3\tchunk1\t70\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
59 pathResData+="3\tchunk2\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
60 pathResData+="3\tchunk3\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
61
62 pathResData+="4\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
63 pathResData+="4\tchunk2\t1\t11\tsub1\t10\t50\t0.01\t1000\t99\n"
64 pathResData+="5\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
65 pathResData+="5\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
66
67 pathResData+="6\tchunk1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
68 pathResData+="6\tchunk1\t90\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
69 pathResData+="6\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
70 pathResData+="7\tchunk2\t61\t71\tsub1\t10\t50\t0.01\t1000\t99\n"
71 pathResData+="8\tchunk2\t101\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
72 pathResData+="8\tchunk3\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
73
74 pathResData+="9\tchunk1\t70\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
75 pathResData+="9\tchunk2\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
76 pathResData+="9\tchunk3\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
77
78 pathResData+="10\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
79 pathResData+="10\tchunk2\t1\t11\tsub1\t10\t50\t0.01\t1000\t99\n"
80 pathResData+="11\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
81 pathResData+="11\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
82 pathResData+="12\tchunk2\t101\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
83 pathResData+="12\tchunk3\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
84
85 pathRes=open(self._resfilename,"w")
86 pathRes.write(pathResData)
87 pathRes.close()
88
89 def tearDown(self):
90 self._db.dropTable(self._chunkmaptable)
91 self._db.dropTable(self._pathtablename)
92 self._db.close()
93 os.remove(self._resfilename)
94 os.remove(self._pathfilename)
95 os.remove(self._chunkmapfilename)
96
97 def test_convert(self):
98 conv=ConvPathChr2Chunk(self._db,self._pathtablename, self._chunkmaptable, self._pathtablename+"_onchk")
99 conv.convert()
100 expPath = self._resfilename
101 obsPath = "dummy_path.onchk"
102 self._db.exportDataToFile("dummy_path_onchk", obsPath)
103 self._db.dropTable("dummy_path_onchk")
104 self.assertTrue(FileUtils.are2FilesIdentical(expPath, obsPath))
105 os.remove(obsPath)
106
107 test_suite = unittest.TestSuite()
108 test_suite.addTest( unittest.makeSuite( Test_ConvPathChr2Chunk ) )
109 if __name__ == '__main__':
110 unittest.TextTestRunner(verbosity=2).run( test_suite )