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1 from commons.core.utils.FileUtils import FileUtils
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2 from commons.core.sql.DbFactory import DbFactory
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3 from commons.pyRepetUnit.convCoord.ConvPathChr2Chunk import ConvPathChr2Chunk
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4 import unittest
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5 import os
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6
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7 class Test_ConvPathChr2Chunk(unittest.TestCase):
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8
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9 def setUp(self):
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10 self._pathfilename="dummy.path"
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11 self._pathtablename="dummy_path"
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12
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13 self._chunkmapfilename="chunk.map"
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14 self._chunkmaptable="test_chunk_map"
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15
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16 self._resfilename="dummy_res.path"
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17
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18 map4convData="chunk1\tchr1\t1\t100\n"
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19 map4convData+="chunk2\tchr1\t90\t200\n"
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20 map4convData+="chunk3\tchr1\t190\t300\n"
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21
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22 map4conv=open(self._chunkmapfilename,"w")
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23 map4conv.write(map4convData)
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24 map4conv.close()
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25
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26 self._db = DbFactory.createInstance()
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27 self._db.createTable(self._chunkmaptable, "map", self._chunkmapfilename, True)
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28
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29 path2convData="1\tchr1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
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30 path2convData+="1\tchr1\t90\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
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31 path2convData+="2\tchr1\t150\t160\tsub1\t10\t50\t0.01\t1000\t99\n"
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32
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33 path2convData+="3\tchr1\t70\t210\tsub1\t10\t50\t0.01\t1000\t99\n"
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34 path2convData+="4\tchr1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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35 path2convData+="5\tchr1\t85\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
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36
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37 path2convData+="6\tchr1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
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38 path2convData+="6\tchr1\t90\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
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39 path2convData+="7\tchr1\t150\t160\tsub1\t10\t50\t0.01\t1000\t99\n"
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40 path2convData+="8\tchr1\t190\t300\tsub1\t10\t50\t0.01\t1000\t99\n"
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41
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42 path2convData+="9\tchr1\t70\t210\tsub1\t10\t50\t0.01\t1000\t99\n"
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43 path2convData+="10\tchr1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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44 path2convData+="11\tchr1\t85\t110\tsub1\t10\t50\t0.01\t1000\t99\n"
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45 path2convData+="12\tchr1\t190\t300\tsub1\t10\t50\t0.01\t1000\t99\n"
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46
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47 path2conv=open(self._pathfilename,"w")
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48 path2conv.write(path2convData)
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49 path2conv.close()
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50
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51 self._db.createTable(self._pathtablename, "path", self._pathfilename)
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52
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53 pathResData="1\tchunk1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
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54 pathResData+="1\tchunk1\t90\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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55 pathResData+="1\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
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56 pathResData+="2\tchunk2\t61\t71\tsub1\t10\t50\t0.01\t1000\t99\n"
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57
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58 pathResData+="3\tchunk1\t70\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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59 pathResData+="3\tchunk2\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
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60 pathResData+="3\tchunk3\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
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61
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62 pathResData+="4\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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63 pathResData+="4\tchunk2\t1\t11\tsub1\t10\t50\t0.01\t1000\t99\n"
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64 pathResData+="5\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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65 pathResData+="5\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
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66
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67 pathResData+="6\tchunk1\t10\t80\tsub1\t10\t50\t0.01\t1000\t99\n"
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68 pathResData+="6\tchunk1\t90\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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69 pathResData+="6\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
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70 pathResData+="7\tchunk2\t61\t71\tsub1\t10\t50\t0.01\t1000\t99\n"
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71 pathResData+="8\tchunk2\t101\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
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72 pathResData+="8\tchunk3\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
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73
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74 pathResData+="9\tchunk1\t70\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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75 pathResData+="9\tchunk2\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
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76 pathResData+="9\tchunk3\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
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77
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78 pathResData+="10\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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79 pathResData+="10\tchunk2\t1\t11\tsub1\t10\t50\t0.01\t1000\t99\n"
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80 pathResData+="11\tchunk1\t85\t100\tsub1\t10\t50\t0.01\t1000\t99\n"
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81 pathResData+="11\tchunk2\t1\t21\tsub1\t10\t50\t0.01\t1000\t99\n"
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82 pathResData+="12\tchunk2\t101\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
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83 pathResData+="12\tchunk3\t1\t111\tsub1\t10\t50\t0.01\t1000\t99\n"
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84
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85 pathRes=open(self._resfilename,"w")
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86 pathRes.write(pathResData)
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87 pathRes.close()
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88
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89 def tearDown(self):
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90 self._db.dropTable(self._chunkmaptable)
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91 self._db.dropTable(self._pathtablename)
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92 self._db.close()
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93 os.remove(self._resfilename)
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94 os.remove(self._pathfilename)
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95 os.remove(self._chunkmapfilename)
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96
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97 def test_convert(self):
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98 conv=ConvPathChr2Chunk(self._db,self._pathtablename, self._chunkmaptable, self._pathtablename+"_onchk")
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99 conv.convert()
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100 expPath = self._resfilename
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101 obsPath = "dummy_path.onchk"
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102 self._db.exportDataToFile("dummy_path_onchk", obsPath)
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103 self._db.dropTable("dummy_path_onchk")
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104 self.assertTrue(FileUtils.are2FilesIdentical(expPath, obsPath))
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105 os.remove(obsPath)
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106
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107 test_suite = unittest.TestSuite()
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108 test_suite.addTest( unittest.makeSuite( Test_ConvPathChr2Chunk ) )
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109 if __name__ == '__main__':
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110 unittest.TextTestRunner(verbosity=2).run( test_suite ) |
