Mercurial > repos > bimib > cobraxy

changeset 67:1f928ad6a87e draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 09:01:06 +0000
parents c46df775b9fa
children d5dd7e863488
files COBRAxy/ras_to_bounds.py
diffstat 1 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 08:36:26 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 09:01:06 2024 +0000
@@ -63,6 +63,11 @@
                     type = str,
                     help = 'output of cell class')
     
+    parser.add_argument('-rn', '--names',
+                    required = True,
+                    type=str,
+                    help = 'ras class names')
+    
     ARGS = parser.parse_args()
     return ARGS
 
@@ -216,8 +221,9 @@
 
     if(ARGS.ras_selector == True):
         ras_file_list = ARGS.input_ras.split(",")
+        ras_file_names = ARGS.names.split(",")
         ras_class_names = []
-        for file in ras_file_list:
+        for file in ras_file_names:
             ras_class_names.append(file.split(".")[0])
         ras_list = []
         class_assignments = pd.DataFrame(columns=["Patient_ID", "Class"])