Mercurial > repos > bioitcore > chimerascan

changeset 5:c6b0f5c3f3b4 draft

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planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty
author bioitcore
date Wed, 13 Sep 2017 15:07:06 -0400
parents 713d8c903d0d
children 6d54abd510d7
files run.sh
diffstat 1 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/run.sh	Wed Sep 13 14:42:12 2017 -0400
+++ b/run.sh	Wed Sep 13 15:07:06 2017 -0400
@@ -1,6 +1,8 @@
 #!/usr/bin/bash
 
-if [ "$(cat installation_chk 2>&1)" != "true" ]; then
-	python setup.py build && python setup.py install
-	echo true > installation_chk 
+if [ "$(cat $1/installation_chk 2>&1)" != "true" ]; then
+        python $1/setup.py build && python $1/setup.py install
+	mv $1/chimerascan $1/chimerascan_bak
+	ln -s /usr/local/lib/python2.7/dist-packages/chimerascan $1
+        echo true > $1/installation_chk
 fi