Mercurial > repos > bjoern-gruening > glimmer3
comparison glimmer3/glimmer_orf_to_seq.xml @ 0:e11e303c39a4 default tip
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| author | bjoern-gruening |
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| date | Wed, 11 Jan 2012 09:34:45 -0500 |
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| -1:000000000000 | 0:e11e303c39a4 |
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| 1 <tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1"> | |
| 2 <description>assigns ORF to its DNA sequence</description> | |
| 3 <command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command> | |
| 4 <inputs> | |
| 5 <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/> | |
| 6 <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data name="output" type="data" format="fasta"/> | |
| 10 </outputs> | |
| 11 <tests> | |
| 12 <test> | |
| 13 </test> | |
| 14 </tests> | |
| 15 <help> | |
| 16 | |
| 17 **What it does** | |
| 18 | |
| 19 | |
| 20 This tool extract all gene sequences from a genome, which are predicted with Glimmer3. | |
| 21 | |
| 22 | |
| 23 ----- | |
| 24 | |
| 25 </help> | |
| 26 </tool> |