<tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1">
	<description>assigns ORF to its DNA sequence</description>
	<command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command>
	<inputs>
		<param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
		<param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/>
	</inputs>
	<outputs>
		<data name="output" type="data" format="fasta"/>
	</outputs>
	<tests>
		<test>
		</test>
	</tests>
	<help>

**What it does**


This tool extract all gene sequences from a genome, which are predicted with Glimmer3.


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	</help>
</tool>