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1 <tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1">
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2 <description>assigns ORF to its DNA sequence</description>
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3 <command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command>
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4 <inputs>
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5 <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
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6 <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/>
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7 </inputs>
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8 <outputs>
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9 <data name="output" type="data" format="fasta"/>
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10 </outputs>
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11 <tests>
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12 <test>
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13 </test>
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14 </tests>
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15 <help>
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16
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17 **What it does**
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18
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19
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20 This tool extract all gene sequences from a genome, which are predicted with Glimmer3.
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21
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22
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23 -----
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24
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25 </help>
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26 </tool>
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