Mercurial > repos > bjoern-gruening > glimmer3

diff glimmer3/glimmer_orf_to_seq.xml @ 0:e11e303c39a4 default tip

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author bjoern-gruening
date Wed, 11 Jan 2012 09:34:45 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/glimmer3/glimmer_orf_to_seq.xml	Wed Jan 11 09:34:45 2012 -0500
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+<tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1">
+	<description>assigns ORF to its DNA sequence</description>
+	<command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command>
+	<inputs>
+		<param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
+		<param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/>
+	</inputs>
+	<outputs>
+		<data name="output" type="data" format="fasta"/>
+	</outputs>
+	<tests>
+		<test>
+		</test>
+	</tests>
+	<help>
+
+**What it does**
+
+
+This tool extract all gene sequences from a genome, which are predicted with Glimmer3.
+
+
+-----
+
+	</help>
+</tool>