Mercurial > repos > brasset_jensen > srnapipe

annotate test-data/res_files/reads-sample-small.fastq/subgroups/bonafide_reads/bonafide_reads-TEs_reads_counts_mismatches.txt @ 61:9185ca0a7b43 draft

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Updated package according to recommendations.
author pierre.pouchin
date Wed, 16 Jan 2019 08:18:13 -0500
parents
children 11708af40030
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61
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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1 ID reads counts RPKM per million of piRNAs per million of miRNAs per million of bonafide reads sense reads counts reverse reads counts % of sense 1U % of sense 10A % of reverse 1U % of reverse 10A
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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2 BATUMI_I 274 881.38 11884.11 4349206.35 8974.78 169 105 96.4497041420118 39.6449704142012 41.9047619047619 23.8095238095238
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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3 BATUMI_LTR 96 9040.50 4163.78 1523809.52 3144.45 3 93 66.6666666666667 0 2.1505376344086 39.7849462365591
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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4 BS2 227 1231.64 9845.59 3603174.60 7435.31 57 170 59.6491228070175 35.0877192982456 7.05882352941176 37.6470588235294
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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5 COPIA_DM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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6 COPIA_DM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
9185ca0a7b43 Updated package according to recommendations.
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7 DMCR1A 78 446.97 3383.07 1238095.24 2554.86 7 71 85.7142857142857 42.8571428571429 23.943661971831 26.7605633802817
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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8 DMRT1B 216 1067.49 9368.49 3428571.43 7075.01 132 84 48.4848484848485 48.4848484848485 8.33333333333333 32.1428571428571
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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9 FW 91 496.79 3946.91 1444444.44 2980.67 31 60 70.9677419354839 80.6451612903226 8.33333333333333 31.6666666666667
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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10 G6_DM 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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11 Gypsy2-I_DM 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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12 Gypsy2-LTR_DM 4 303.13 173.49 63492.06 131.02 0 4 0 0 0 25
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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13 I_DM 38 181.12 1648.16 603174.60 1244.68 12 26 50 33.3333333333333 19.2307692307692 50
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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14 MAX_I 36 116.52 1561.42 571428.57 1179.17 15 21 60 6.66666666666667 23.8095238095238 23.8095238095238
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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15 MAX_LTR 45 3590.85 1951.77 714285.71 1473.96 12 33 0 91.6666666666667 9.09090909090909 3.03030303030303
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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16 PROTOP 127 726.13 5508.33 2015873.02 4159.84 55 72 65.4545454545455 63.6363636363636 27.7777777777778 23.6111111111111
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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17 ZAM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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18 ZAM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0