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comparison test-data/res_files/reads-sample-small.fastq/subgroups/bonafide_reads/bonafide_reads-TEs_reads_counts_nomismatches.txt @ 61:9185ca0a7b43 draft

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Updated package according to recommendations.
author pierre.pouchin
date Wed, 16 Jan 2019 08:18:13 -0500
parents
children 11708af40030
comparison
equal deleted inserted replaced
60:9645d995fb3c 61:9185ca0a7b43
1 ID reads counts RPKM per million of piRNAs per million of miRNAs per million of bonafide reads sense reads counts reverse reads counts % of sense 1U % of sense 10A % of reverse 1U % of reverse 10A
2 BATUMI_I 59 189.79 2558.99 936507.94 1932.53 10 49 60 20 42.8571428571429 14.2857142857143
3 BATUMI_LTR 6 565.03 260.24 95238.10 196.53 1 5 100 0 0 60
4 BS2 7010 38034.19 304042.33 111269841.27 229610.22 1430 5580 44.1258741258741 40.4895104895105 16.0573476702509 31.326164874552
5 COPIA_DM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
6 COPIA_DM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
7 DMCR1A 315 1805.07 13662.39 5000000.00 10317.72 86 229 50 52.3255813953488 19.6506550218341 34.061135371179
8 DMRT1B 161 795.67 6983.00 2555555.56 5273.50 67 94 23.8805970149254 14.9253731343284 1.06382978723404 6.38297872340426
9 FW 15077 82308.96 653929.56 239317460.32 493842.12 2649 12428 39.7885994714987 57.115892789732 14.9581589958159 25.9736079819762
10 G6_DM 2055 25777.83 89130.81 32619047.62 67310.84 427 1628 54.8009367681499 49.1803278688525 2.08845208845209 29.8525798525799
11 Gypsy2-I_DM 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
12 Gypsy2-LTR_DM 191 14474.61 8284.18 3031746.03 6256.14 82 109 54.8780487804878 31.7073170731707 10.0917431192661 18.348623853211
13 I_DM 10 47.66 433.73 158730.16 327.55 6 4 50 33.3333333333333 50 0
14 MAX_I 84 271.88 3643.30 1333333.33 2751.39 15 69 86.6666666666667 6.66666666666667 73.9130434782609 15.9420289855072
15 MAX_LTR 57 4548.41 2472.24 904761.90 1867.02 22 35 36.3636363636364 9.09090909090909 0 54.2857142857143
16 PROTOP 83 474.56 3599.93 1317460.32 2718.64 26 57 42.3076923076923 65.3846153846154 17.5438596491228 36.8421052631579
17 ZAM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
18 ZAM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0