comparison tool-data/blast_reporting_fields.loc.sample @ 0:7db7ecc78ad6 draft

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author damion
date Mon, 02 Mar 2015 20:46:00 -0500
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-1:000000000000 0:7db7ecc78ad6
1 #value type subtype sort filter default min max choose short_name name
2 # Remember to edit tool_data_table_conf.xml for column spec!
3 length numeric int 1 1 1 Length Alignment length
4 qstart numeric int 1 1 1 Q. Start Alignment start in query
5 qend numeric int 1 1 1 Q. End Alignment end in query
6 sstart numeric int 1 1 1 S. Start Alignment start in subject
7 send numeric int 1 1 1 S. End Alignment end in subject
8 qseq text atgc 0 1 1 Q. Alignment Aligned part of query sequence
9 sseq text atgc 0 1 1 S. Alignment Aligned part of subject sequence
10 mseq text atgc 0 1 1 Alignment Alignment, matched part
11 #
12 bitscore numeric int 1 1 1 Bit Score Bit score
13 evalue numeric float 1 1 1 E-value Expectation value
14 pcov numeric int 1 1 1 % Coverage % coverage
15 gapopen numeric int 1 1 1 Gaps-openings # of gap openings
16 gaps numeric int 1 1 1 Gaps Total number of gaps
17 mismatch numeric int 1 1 1 Mismatches # of mismatches
18 nident numeric int 1 1 1 Ident. Matches # of identical matches
19 positive numeric int 1 1 1 Pos. Matches # of positive-scoring matches
20 pident numeric float 1 1 97 90 100 1 % Identical % of identical matches
21 ppos numeric float 1 1 1 % Positive % of positive-scoring matches
22 score numeric int 1 1 1 Raw Score Raw Score
23 #
24 qseqid text int 1 1 1 Query Id Query sequence id
25 qframe numeric int 1 1 1 Query Frame Query frame
26 qlen numeric int 1 1 1 Query Length Query sequence length
27 #
28 accessionid text 1 1 1 Accession Subject accession id
29 sframe numeric int 1 1 1 Subject Frame Subject frame
30 sallseqdescr text 0 1 1 Subject Descriptions Subject sequence desc(s) (all)
31 sseqdescr text 1 1 1 Subject Description Subject sequence desc. (first)
32 sseqid text int 1 1 1 Subject Id Subject sequence id
33 sallseqid text 1 1 1 Subject Ids Subject sequence ids (all)
34 slen numeric int 1 1 1 Subject Length Subject sequence length