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1 <tool id="imgt_locus_split" name="IMGT Locus Split" version="0.1">
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2 <requirements>
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3
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3 <requirement type="package" version="3.7.1">python</requirement>
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4 <requirement type="package" version="0.4.15">python-magic</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 python3 $__tool_directory__/imgt_locus_split.py
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8 --input $input
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9 --loci $loci
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10 --output $output
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11 ]]></command>
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12 <inputs>
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13 <param name="input" type="data" format="data" label="The IMGT zip file to be split"/>
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14 <param name="loci" type="select" label="Loci" multiple="true" display="checkboxes">
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15 <option value="IG" selected="true">IG</option>
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16 <option value="IGH">IGH</option>
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17 <option value="IGK">IGK</option>
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18 <option value="IGL">IGL</option>
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19 <option value="TR" selected="true">TR</option>
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20 <option value="TRA">TRA</option>
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21 <option value="TRB">TRB</option>
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22 <option value="TRD">TRD</option>
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23 <option value="TRG">TRG</option>
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24 </param>
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25 </inputs>
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26 <outputs>
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27 <data format="imgt_archive" name="output" label="${input.name} $loci" />
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28 </outputs>
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29 <help><![CDATA[
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30 Creates a new IMGT zip file for every checked locus with sequences from only that locus.
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31 ]]></help>
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32 <citations>
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33 <citation type="doi">10.1093/nar/gku1056</citation>
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34 </citations>
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35 </tool> |
