ncbi_blast_plus: test-data/tblastn_four_human_vs

annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 28:87a7ee4cb36f draft

"Updated to 2.9.0+galaxy0"

author	peterjc
date	Thu, 10 Sep 2020 10:35:28 +0000
parents	31e517610e1f
children	5edc472ec434

rev	line source
0 d375502056f1 Uploaded devteam parents: diff changeset	1 <HTML>
23 31e517610e1f v0.3.0 Updated for NCBI BLAST+ 2.7.1 peterjc parents: 21 diff changeset	2 <HEAD><TITLE>BLAST Search Results</TITLE></HEAD>
0 d375502056f1 Uploaded devteam parents: diff changeset	3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
d375502056f1 Uploaded devteam parents: diff changeset	4 <PRE>
d375502056f1 Uploaded devteam parents: diff changeset	5
28 87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	6 <b>TBLASTN 2.9.0+</b>
0 d375502056f1 Uploaded devteam parents: diff changeset	7
d375502056f1 Uploaded devteam parents: diff changeset	8
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	9 <b><a
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	10 href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	11 etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	12 Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	13 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	14 "Gapped BLAST and PSI-BLAST: a new generation of protein database
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	15 search programs", Nucleic Acids Res. 25:3389-3402.
0 d375502056f1 Uploaded devteam parents: diff changeset	16
d375502056f1 Uploaded devteam parents: diff changeset	17
d375502056f1 Uploaded devteam parents: diff changeset	18
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	19 Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	20 6 sequences; 10,296 total letters
0 d375502056f1 Uploaded devteam parents: diff changeset	21
d375502056f1 Uploaded devteam parents: diff changeset	22
d375502056f1 Uploaded devteam parents: diff changeset	23
d375502056f1 Uploaded devteam parents: diff changeset	24 <b>Query=</b> sp\|Q9BS26\|ERP44_HUMAN Endoplasmic reticulum resident protein 44
d375502056f1 Uploaded devteam parents: diff changeset	25 OS=Homo sapiens GN=ERP44 PE=1 SV=1
d375502056f1 Uploaded devteam parents: diff changeset	26
d375502056f1 Uploaded devteam parents: diff changeset	27 Length=406
d375502056f1 Uploaded devteam parents: diff changeset	28
d375502056f1 Uploaded devteam parents: diff changeset	29
d375502056f1 Uploaded devteam parents: diff changeset	30 *** No hits found ***
d375502056f1 Uploaded devteam parents: diff changeset	31
d375502056f1 Uploaded devteam parents: diff changeset	32
d375502056f1 Uploaded devteam parents: diff changeset	33
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	34 Lambda K H a alpha
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	35 0.347 0.182 0.684 0.522 1.92
0 d375502056f1 Uploaded devteam parents: diff changeset	36
d375502056f1 Uploaded devteam parents: diff changeset	37 Gapped
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	38 Lambda K H a alpha sigma
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	39 0.299 0.0710 0.270 1.10 13.8 14.5
0 d375502056f1 Uploaded devteam parents: diff changeset	40
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	41 Effective search space used: 1239330
0 d375502056f1 Uploaded devteam parents: diff changeset	42
d375502056f1 Uploaded devteam parents: diff changeset	43
d375502056f1 Uploaded devteam parents: diff changeset	44 <b>Query=</b> sp\|Q9NSY1\|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
d375502056f1 Uploaded devteam parents: diff changeset	45 GN=BMP2K PE=1 SV=2
d375502056f1 Uploaded devteam parents: diff changeset	46
d375502056f1 Uploaded devteam parents: diff changeset	47 Length=1161
d375502056f1 Uploaded devteam parents: diff changeset	48
d375502056f1 Uploaded devteam parents: diff changeset	49
d375502056f1 Uploaded devteam parents: diff changeset	50 *** No hits found ***
d375502056f1 Uploaded devteam parents: diff changeset	51
d375502056f1 Uploaded devteam parents: diff changeset	52
d375502056f1 Uploaded devteam parents: diff changeset	53
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	54 Lambda K H a alpha
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	55 0.334 0.170 0.615 0.522 1.92
0 d375502056f1 Uploaded devteam parents: diff changeset	56
d375502056f1 Uploaded devteam parents: diff changeset	57 Gapped
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	58 Lambda K H a alpha sigma
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	59 0.299 0.0710 0.270 1.10 13.8 14.5
0 d375502056f1 Uploaded devteam parents: diff changeset	60
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	61 Effective search space used: 3667980
0 d375502056f1 Uploaded devteam parents: diff changeset	62
d375502056f1 Uploaded devteam parents: diff changeset	63
d375502056f1 Uploaded devteam parents: diff changeset	64 <b>Query=</b> sp\|P06213\|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded devteam parents: diff changeset	65 SV=4
d375502056f1 Uploaded devteam parents: diff changeset	66
d375502056f1 Uploaded devteam parents: diff changeset	67 Length=1382
d375502056f1 Uploaded devteam parents: diff changeset	68
d375502056f1 Uploaded devteam parents: diff changeset	69
d375502056f1 Uploaded devteam parents: diff changeset	70 *** No hits found ***
d375502056f1 Uploaded devteam parents: diff changeset	71
d375502056f1 Uploaded devteam parents: diff changeset	72
d375502056f1 Uploaded devteam parents: diff changeset	73
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	74 Lambda K H a alpha
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	75 0.346 0.180 0.700 0.522 1.92
0 d375502056f1 Uploaded devteam parents: diff changeset	76
d375502056f1 Uploaded devteam parents: diff changeset	77 Gapped
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	78 Lambda K H a alpha sigma
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	79 0.299 0.0710 0.270 1.10 13.8 14.5
0 d375502056f1 Uploaded devteam parents: diff changeset	80
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	81 Effective search space used: 4374000
0 d375502056f1 Uploaded devteam parents: diff changeset	82
d375502056f1 Uploaded devteam parents: diff changeset	83
d375502056f1 Uploaded devteam parents: diff changeset	84 <b>Query=</b> sp\|P08100\|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded devteam parents: diff changeset	85
d375502056f1 Uploaded devteam parents: diff changeset	86 Length=348
28 87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	87 Score E
87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	88 Sequences producing significant alignments: (Bits) Value
0 d375502056f1 Uploaded devteam parents: diff changeset	89
28 87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	90 gi\|57163782\|ref\|NM_001009242.1\| Felis catus rhodopsin (RHO), mRNA <a href=#Subject_1>732</a> 0.0
87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	91 gi\|18148870\|dbj\|AB062417.1\| Synthetic construct Bos taurus gene f... <a href=#Subject_5>711</a> 0.0
87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	92 gi\|283855822\|gb\|GQ290312.1\| Myotis ricketti voucher GQX10 rhodops... <a href=#Subject_4>658</a> 0.0
87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	93 gi\|2734705\|gb\|U59921.1\|BBU59921 Bufo bufo rhodopsin mRNA, complet... <a href=#Subject_2>646</a> 0.0
87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	94 gi\|12583664\|dbj\|AB043817.1\| Conger myriaster conf gene for fresh ... <a href=#Subject_6>626</a> 0.0
87a7ee4cb36f "Updated to 2.9.0+galaxy0" peterjc parents: 23 diff changeset	95 gi\|283855845\|gb\|GQ290303.1\| Cynopterus brachyotis voucher 2002043... <a href=#Subject_3>229</a> 3e-67
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	96
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	97
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	98 ><a name=Subject_1></a> gi\|57163782\|ref\|NM_001009242.1\| Felis catus rhodopsin (RHO),
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	99 mRNA
0 d375502056f1 Uploaded devteam parents: diff changeset	100 Length=1047
d375502056f1 Uploaded devteam parents: diff changeset	101
18 577d9c12411a v0.1.06, now using BLAST+ 2.2.31 peterjc parents: 15 diff changeset	102 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
0 d375502056f1 Uploaded devteam parents: diff changeset	103 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
d375502056f1 Uploaded devteam parents: diff changeset	104 Frame = +1
d375502056f1 Uploaded devteam parents: diff changeset	105
d375502056f1 Uploaded devteam parents: diff changeset	106 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded devteam parents: diff changeset	107 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
d375502056f1 Uploaded devteam parents: diff changeset	108 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
d375502056f1 Uploaded devteam parents: diff changeset	109
d375502056f1 Uploaded devteam parents: diff changeset	110 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded devteam parents: diff changeset	111 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
d375502056f1 Uploaded devteam parents: diff changeset	112 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
d375502056f1 Uploaded devteam parents: diff changeset	113
d375502056f1 Uploaded devteam parents: diff changeset	114 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded devteam parents: diff changeset	115 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
d375502056f1 Uploaded devteam parents: diff changeset	116 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
d375502056f1 Uploaded devteam parents: diff changeset	117
d375502056f1 Uploaded devteam parents: diff changeset	118 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded devteam parents: diff changeset	119 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
d375502056f1 Uploaded devteam parents: diff changeset	120 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
d375502056f1 Uploaded devteam parents: diff changeset	121
d375502056f1 Uploaded devteam parents: diff changeset	122 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded devteam parents: diff changeset	123 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
d375502056f1 Uploaded devteam parents: diff changeset	124 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
d375502056f1 Uploaded devteam parents: diff changeset	125
d375502056f1 Uploaded devteam parents: diff changeset	126 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
d375502056f1 Uploaded devteam parents: diff changeset	127 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
d375502056f1 Uploaded devteam parents: diff changeset	128 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
d375502056f1 Uploaded devteam parents: diff changeset	129
d375502056f1 Uploaded devteam parents: diff changeset	130
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	131 ><a name=Subject_5></a> gi\|18148870\|dbj\|AB062417.1\| Synthetic construct Bos taurus gene
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	132 for rhodopsin, complete cds
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	133 Length=1047
0 d375502056f1 Uploaded devteam parents: diff changeset	134
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	135 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	136 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	137 Frame = +1
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	138
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	139 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	140 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	141 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	142
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	143 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	144 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	145 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
0 d375502056f1 Uploaded devteam parents: diff changeset	146
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	147 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	148 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	149 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	150
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	151 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	152 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	153 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
0 d375502056f1 Uploaded devteam parents: diff changeset	154
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	155 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	156 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	157 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	158
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	159 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	160 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	161 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
0 d375502056f1 Uploaded devteam parents: diff changeset	162
d375502056f1 Uploaded devteam parents: diff changeset	163
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	164 ><a name=Subject_4></a> gi\|283855822\|gb\|GQ290312.1\| Myotis ricketti voucher GQX10 rhodopsin
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	165 (RHO) mRNA, partial cds
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	166 Length=983
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	167
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	168 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	169 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	170 Frame = +1
0 d375502056f1 Uploaded devteam parents: diff changeset	171
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	172 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	173 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	174 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	175
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	176 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	177 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	178 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
0 d375502056f1 Uploaded devteam parents: diff changeset	179
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	180 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	181 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	182 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	183
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	184 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	185 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	186 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
0 d375502056f1 Uploaded devteam parents: diff changeset	187
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	188 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	189 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	190 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	191
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	192 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	193 KQFRNCMLTT+CCGKNPLGDDEAS T
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	194 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	195
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	196
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	197 ><a name=Subject_2></a> gi\|2734705\|gb\|U59921.1\|BBU59921 Bufo bufo rhodopsin mRNA, complete
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	198 cds
0 d375502056f1 Uploaded devteam parents: diff changeset	199 Length=1574
d375502056f1 Uploaded devteam parents: diff changeset	200
18 577d9c12411a v0.1.06, now using BLAST+ 2.2.31 peterjc parents: 15 diff changeset	201 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
0 d375502056f1 Uploaded devteam parents: diff changeset	202 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
d375502056f1 Uploaded devteam parents: diff changeset	203 Frame = +3
d375502056f1 Uploaded devteam parents: diff changeset	204
d375502056f1 Uploaded devteam parents: diff changeset	205 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded devteam parents: diff changeset	206 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
d375502056f1 Uploaded devteam parents: diff changeset	207 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
d375502056f1 Uploaded devteam parents: diff changeset	208
d375502056f1 Uploaded devteam parents: diff changeset	209 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded devteam parents: diff changeset	210 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
d375502056f1 Uploaded devteam parents: diff changeset	211 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
d375502056f1 Uploaded devteam parents: diff changeset	212
d375502056f1 Uploaded devteam parents: diff changeset	213 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded devteam parents: diff changeset	214 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
d375502056f1 Uploaded devteam parents: diff changeset	215 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
d375502056f1 Uploaded devteam parents: diff changeset	216
d375502056f1 Uploaded devteam parents: diff changeset	217 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded devteam parents: diff changeset	218 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
d375502056f1 Uploaded devteam parents: diff changeset	219 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
d375502056f1 Uploaded devteam parents: diff changeset	220
d375502056f1 Uploaded devteam parents: diff changeset	221 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded devteam parents: diff changeset	222 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
d375502056f1 Uploaded devteam parents: diff changeset	223 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
d375502056f1 Uploaded devteam parents: diff changeset	224
d375502056f1 Uploaded devteam parents: diff changeset	225 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
d375502056f1 Uploaded devteam parents: diff changeset	226 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
d375502056f1 Uploaded devteam parents: diff changeset	227 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
d375502056f1 Uploaded devteam parents: diff changeset	228
d375502056f1 Uploaded devteam parents: diff changeset	229
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	230 ><a name=Subject_6></a> gi\|12583664\|dbj\|AB043817.1\| Conger myriaster conf gene for fresh
0 d375502056f1 Uploaded devteam parents: diff changeset	231 water form rod opsin, complete cds
d375502056f1 Uploaded devteam parents: diff changeset	232 Length=1344
d375502056f1 Uploaded devteam parents: diff changeset	233
18 577d9c12411a v0.1.06, now using BLAST+ 2.2.31 peterjc parents: 15 diff changeset	234 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
8 1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns. peterjc parents: 0 diff changeset	235 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
0 d375502056f1 Uploaded devteam parents: diff changeset	236 Frame = +2
d375502056f1 Uploaded devteam parents: diff changeset	237
d375502056f1 Uploaded devteam parents: diff changeset	238 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded devteam parents: diff changeset	239 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
d375502056f1 Uploaded devteam parents: diff changeset	240 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
d375502056f1 Uploaded devteam parents: diff changeset	241
d375502056f1 Uploaded devteam parents: diff changeset	242 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded devteam parents: diff changeset	243 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
d375502056f1 Uploaded devteam parents: diff changeset	244 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
d375502056f1 Uploaded devteam parents: diff changeset	245
d375502056f1 Uploaded devteam parents: diff changeset	246 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded devteam parents: diff changeset	247 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
d375502056f1 Uploaded devteam parents: diff changeset	248 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
d375502056f1 Uploaded devteam parents: diff changeset	249
d375502056f1 Uploaded devteam parents: diff changeset	250 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded devteam parents: diff changeset	251 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
d375502056f1 Uploaded devteam parents: diff changeset	252 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
d375502056f1 Uploaded devteam parents: diff changeset	253
d375502056f1 Uploaded devteam parents: diff changeset	254 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded devteam parents: diff changeset	255 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
d375502056f1 Uploaded devteam parents: diff changeset	256 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
d375502056f1 Uploaded devteam parents: diff changeset	257
d375502056f1 Uploaded devteam parents: diff changeset	258 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
d375502056f1 Uploaded devteam parents: diff changeset	259 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
d375502056f1 Uploaded devteam parents: diff changeset	260 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
d375502056f1 Uploaded devteam parents: diff changeset	261
d375502056f1 Uploaded devteam parents: diff changeset	262
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	263 ><a name=Subject_3></a> gi\|283855845\|gb\|GQ290303.1\| Cynopterus brachyotis voucher 20020434
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	264 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	265 Length=4301
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	266
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	267 Score = 151 bits (342), Expect(2) = 1e-71, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	268 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	269 Frame = +3
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	270
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	271 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	272 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	273 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	274
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	275 Query 299 AIYNPVIYIMMNKQ 312
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	276 +IYNPVIYIMMNKQ
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	277 Sbjct 3327 SIYNPVIYIMMNKQ 3368
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	278
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	279
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	280 Score = 126 bits (284), Expect(2) = 1e-71, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	281 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	282 Frame = +2
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	283
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	284 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	285 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	286 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	287
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	288
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	289 Score = 229 bits (523), Expect = 3e-67, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	290 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	291 Frame = +1
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	292
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	293 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	294 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	295 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	296
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	297 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	298 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	299 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	300
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	301
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	302 Score = 122 bits (276), Expect = 2e-32, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	303 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	304 Frame = +3
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	305
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	306 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	307 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	308 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	309
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	310
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	311 Score = 57.7 bits (125), Expect = 4e-12, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	312 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	313 Frame = +1
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	314
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	315 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	316 QFRNCMLTT+CCGKNPLGDDEAS T
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	317 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	318
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	319
0 d375502056f1 Uploaded devteam parents: diff changeset	320
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	321 Lambda K H a alpha
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	322 0.351 0.182 0.707 0.522 1.92
0 d375502056f1 Uploaded devteam parents: diff changeset	323
d375502056f1 Uploaded devteam parents: diff changeset	324 Gapped
11 4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	325 Lambda K H a alpha sigma
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. peterjc parents: 8 diff changeset	326 0.299 0.0710 0.270 1.10 13.8 14.5
0 d375502056f1 Uploaded devteam parents: diff changeset	327
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	328 Effective search space used: 1049670
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	329
0 d375502056f1 Uploaded devteam parents: diff changeset	330
21 7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	331 Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	332 Posted date: Unknown
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	333 Number of letters in database: 10,296
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml peterjc parents: 18 diff changeset	334 Number of sequences in database: 6
0 d375502056f1 Uploaded devteam parents: diff changeset	335
d375502056f1 Uploaded devteam parents: diff changeset	336
d375502056f1 Uploaded devteam parents: diff changeset	337
d375502056f1 Uploaded devteam parents: diff changeset	338 Matrix: BLOSUM80
d375502056f1 Uploaded devteam parents: diff changeset	339 Gap Penalties: Existence: 10, Extension: 1
d375502056f1 Uploaded devteam parents: diff changeset	340 Neighboring words threshold: 14
d375502056f1 Uploaded devteam parents: diff changeset	341 Window for multiple hits: 25
d375502056f1 Uploaded devteam parents: diff changeset	342 </PRE>
d375502056f1 Uploaded devteam parents: diff changeset	343 </BODY>
d375502056f1 Uploaded devteam parents: diff changeset	344 </HTML>

Mercurial > repos > devteam > ncbi_blast_plus

annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 28:87a7ee4cb36f draft