Mercurial > repos > devteam > vcfgenotypes
diff vcfgenotypes.xml @ 0:1673e7848bf4 draft
Uploaded
author | devteam |
---|---|
date | Thu, 19 Mar 2015 14:33:25 -0400 |
parents | |
children | 82635a34fbe6 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vcfgenotypes.xml Thu Mar 19 14:33:25 2015 -0400 @@ -0,0 +1,30 @@ +<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3"> + <description>Convert numerical representation of genotypes to allelic</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"></expand> + <expand macro="stdio" /> + <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> + </inputs> + <outputs> + <data format="tabular" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="vcf_input" value="vcflib.vcf"/> + <output name="out_file1" file="vcfgenotypes-test1.tab"/> + </test> + </tests> + <help> + +Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. + +---- + +Vcfgenotypes @IS_PART_OF_VCFLIB@ +</help> + <expand macro="citations" /> +</tool>